CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0599900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0599900 CF291190 - Conserved hypothetical protein 1e-1 At5g09530 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.83 95.8 Os07g0599700 AK065663.1 - Surface protein PspC 6e+0 At5g09480 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.77 93.1 Os07g0599500 AK068696.1 - Conserved hypothetical protein 2e+0 At5g42504 unknown protein S.X. H.G.
0.73 91.1 Os08g0478000 AK059493.1 - Conserved hypothetical protein 4e-1 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.73 91.1 Os05g0245300 AB091471.1 - Protein of unknown function DUF588 family protein 7e+0 Atcg00790 - S.X. H.G.
0.67 87.2 Os07g0142300 AK108823.1 - Conserved hypothetical protein 7e+0 At4g30730 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.4 99.1 GSM262002 IAC165, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.4 98.9 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.9 98.7 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.4 98.5 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.0 98.4 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.0 98.4 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.2 98.2 GSM359923 Pokkali root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.0 98.2 GSM262006 IAC165, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.4 98.1 GSM262007 IAC165, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.8 98.0 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-13 77 Os07g0599700 AK065663.1 - Surface protein PspC 6e+0 At5g09480 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.26 3e-9 63 Os07g0599500 AK068696.1 - Conserved hypothetical protein 2e+0 At5g42504 unknown protein C.G. S.X.
0.21 2e-4 48 Os07g0599600 AK106214.1 - Hypothetical protein 1e-1 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) C.G. S.X.
0.19 3e-9 63 Os07g0599300 AK107490.1 - - 5e+0 At1g01540 protein kinase family protein C.G. S.X.
0.08 3e-3 44 Os07g0600200 AK105814.1 - Conserved hypothetical protein 5e+0 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 2e-1 38 Os01g0589300 AK058846.1 - Single myb histone 1 9e-4 At1g49950 DNA-binding protein, putative C.G. S.X.
0.02 8e-1 36 Os02g0135300 9630.m00332 - Wee1-like protein (Fragment) 1e-2 At1g02970 WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) C.G. S.X.
0.01 2e-1 38 Os06g0214900 AK064752.1 - Pyridine nucleotide-disulphide oxidoreductase,class I family protein 3e-13 At5g08740 NDC1 (NAD(P)H dehydrogenase C1) C.G. S.X.
0.01 8e-1 36 Os12g0621500 AK111785.1 - IRE 5e-44 At5g62310 IRE (INCOMPLETE ROOT HAIR ELONGATION) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.83820.1.S1_at CA801682 wee1 - 4e-3 At1g02970 WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) C.G. S.X.
0.20 1e-8 59 Hordeum vulgare Contig12203_at Contig12203 - - 2e+0 At5g09530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 2e-3 44 Populus trichocarpa PtpAffx.30807.1.A1_at CV260510 hypothetical protein - 3e-1 At2g33855 unknown protein C.G. S.X.
0.23 5e-13 75 Triticum aestivum Ta.9281.1.S1_x_at BQ162594 - - 6e-1 At3g09730 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1615891_at CF513223 hypothetical protein LOC100240779 - 2e-1 At3g25050 XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3) C.G. S.X.
0.14 4e-2 38 Zea mays Zm.2556.1.A1_at BM075217 hypothetical protein LOC100194091 - 4e-1 At5g09530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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