CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0599700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0599700 AK065663.1 - Surface protein PspC 6e+0 At5g09480 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.83 95.8 Os07g0599500 AK068696.1 - Conserved hypothetical protein 2e+0 At5g42504 unknown protein S.X. H.G.
0.83 95.8 Os07g0599900 CF291190 - Conserved hypothetical protein 1e-1 At5g09530 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.73 91.1 Os01g0827300 AK071929.1 - Laccase precursor (EC 1.10.3.2) 7e-5 At2g30210 LAC3 (laccase 3) S.X. H.G.
0.73 91.1 Os05g0245300 AB091471.1 - Protein of unknown function DUF588 family protein 7e+0 Atcg00790 - S.X. H.G.
0.67 87.2 Os08g0478000 AK059493.1 - Conserved hypothetical protein 4e-1 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.8 99.3 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
22.1 99.3 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
19.8 99.1 GSM262002 IAC165, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.7 98.9 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.7 98.6 GSM359924 Pokkali root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.8 98.5 GSM359923 Pokkali root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.2 98.3 GSM262006 IAC165, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.1 98.3 GSM262003 IAC165, 4 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.0 98.3 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.4 98.2 GSM159177 Root, 7-day-old Seedling, biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-13 77 Os07g0599900 CF291190 - Conserved hypothetical protein 1e-1 At5g09530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.21 2e-7 57 Os07g0599500 AK068696.1 - Conserved hypothetical protein 2e+0 At5g42504 unknown protein C.G. S.X.
0.19 8e-4 46 Os07g0599300 AK107490.1 - - 5e+0 At1g01540 protein kinase family protein C.G. S.X.
0.14 8e-7 56 Os07g0599600 AK106214.1 - Hypothetical protein 1e-1 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) C.G. S.X.
0.05 1e-2 42 Os07g0600200 AK105814.1 - Conserved hypothetical protein 5e+0 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 2e-1 38 Os01g0801200 AK112093.1 - Conserved hypothetical protein 3e-3 At2g23320 WRKY15 C.G. S.X.
0.02 8e-1 36 Os09g0561700 9637.m03312 - - 3e-2 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.01 2e-1 38 Os03g0233800 AK108855.1 - Conserved hypothetical protein 3e-1 At1g16750 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e+0 32 Arabidopsis thaliana At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.51870.2.S1_at AI437568 - - 1e+0 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.11 3e-9 61 Hordeum vulgare Contig13686_at Contig13686 - - 1e+0 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.84852.1.A1_at CA932310 hypothetical protein - 4e-12 At5g54810 TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) C.G. S.X.
0.15 2e-6 54 Triticum aestivum Ta.8942.1.S1_at BQ162668 - - 8e+0 At4g10470 unknown protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1620803_at CD802327 - - 2e-5 At4g09070 - C.G. S.X.
0.13 1e-5 50 Zea mays Zm.2556.1.A1_at BM075217 hypothetical protein LOC100194091 - 4e-1 At5g09530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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