CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0566500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0566500 AK063406.1 - No apical meristem (NAM) protein domain containingprotein 1e-3 At3g15510 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) S.X. H.G.
0.15 10.3 Os04g0687800 AK107360.1 - Conserved hypothetical protein 5e-2 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) S.X. H.G.
0.00 0.1 Os11g0144500 AK067633.1 - Zn-finger, RING domain containing protein 5e-1 At4g17760 damaged DNA binding / exodeoxyribonuclease III S.X. H.G.
0.00 0.1 Os01g0761500 AK069522.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 1e+0 At3g16300 integral membrane family protein S.X. H.G.
0.00 0.1 Os05g0444500 CA760194 - - 2e+0 At1g27740 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.00 0.1 Os02g0126300 AK070676.1 - MAP65/ASE1 family protein 3e-1 At5g62460 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.4 99.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
38.4 99.8 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
31.8 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
31.1 99.7 GSM154958 Leaf_control_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
15.4 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.7 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-30 135 Os01g0816100 AB028183.1 - NAC-domain containing protein 2 (ANAC002) 2e-7 At5g63790 ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) C.G. S.X.
0.18 1e-29 133 Os05g0421600 AK107746.1 - Conserved hypothetical protein 3e-18 At1g01720 ATAF1 C.G. S.X.
0.18 2e-28 129 Os01g0884300 AK068392.1 - No apical meristem (NAM) protein domain containingprotein 7e-29 At1g01720 ATAF1 C.G. S.X.
0.18 2e-21 105 Os11g0126900 AK069257.1 - No apical meristem (NAM) protein domain containingprotein 4e-6 At3g15510 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) C.G. S.X.
0.18 4e-17 91 Os07g0683200 AK068606.1 - NAC-domain containing protein 19 (ANAC019) (ANAC)(Abscicic-acid- responsive NAC) 5e-2 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.13 4e-23 111 Os11g0184900 AB028184.1 - OsNAC5 protein 6e-2 At5g08790 ATAF2 C.G. S.X.
0.06 1e-16 89 Os06g0344900 9634.m02331 - No apical meristem (NAM) protein family protein 1e-3 At1g76420 CUC3 (CUP SHAPED COTYLEDON3) C.G. S.X.
0.05 4e-20 101 Os09g0509100 AK060509.1 - No apical meristem (NAM) protein domain containingprotein 2e-1 At4g18692 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-3 46 Arabidopsis thaliana At3g15510 820790 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. - - - C.G. S.X.
0.18 1e-25 119 Glycine max GmaAffx.84569.1.S1_at BM092513 NAC domain protein - 6e-17 At3g15510 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) C.G. S.X.
0.22 9e-18 91 Hordeum vulgare Contig13658_at Contig13658 - - 2e-1 At1g69490 NAP (NAC-like, activated by AP3/PI) C.G. S.X.
0.09 5e-3 44 Populus trichocarpa PtpAffx.13344.2.S1_a_at CV254122 NAC domain protein, IPR003441 - 7e-19 At1g01720 ATAF1 C.G. S.X.
0.18 3e-19 97 Triticum aestivum Ta.13164.1.S1_at BQ171469 - - 4e-2 At5g08790 ATAF2 C.G. S.X.
0.17 8e-20 97 Vitis vinifera 1621723_at CA817798 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) C.G. S.X.
0.17 3e-14 79 Zea mays Zm.10172.1.A1_at CO532781 hypothetical protein LOC100273092 - 2e-1 At1g01720 ATAF1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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