Gene omics information

Query gene ID	Os07g0557200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	76.3	Os07g0557200	AK101098.1	-	Delayed-early response protein/equilibrativenucleoside transporter family protein	8e-5	At4g05120	FUR1 (FUDR RESISTANT 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os09g0255000	AK069080.1	-	Cell wall invertase (EC 3.2.1.26)	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os09g0461700	AK066139.1	-	Esterase/lipase/thioesterase domain containingprotein	2e-1	At5g16080	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os03g0854600	AK104577.1	-	Glycoside hydrolase, family 16 domain containingprotein	7e-1	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os06g0534800	AK120650.1	-	Ankyrin repeat containing protein	3e+0	At5g23100	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os09g0403000	AK111051.1	-	Conserved hypothetical protein	1e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	98.6	GSM359921	Pokkali root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
13.7	98.5	GSM359902	FL478 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.9	98.4	GSM359919	Pokkali root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.0	98.3	GSM195226	Root	GSE7951	Genome-wide gene expression profiling of rice stigma
11.2	98.2	GSM359920	Pokkali root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.8	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM359903	FL478 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.2	98.0	GSM359904	FL478 root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.0	97.8	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM359913	IR63731 root, control, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-79	297	Os07g0557400	AK065096.1	-	Conserved hypothetical protein	2e-1	At5g42240	scpl42 (serine carboxypeptidase-like 42)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	6e-1	38	Os07g0557100	AK102045.1	-	Delayed-early response protein/equilibrativenucleoside transporter family protein	3e-3	At4g05120	FUR1 (FUDR RESISTANT 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os12g0511600	9640.m03179	-	-	2e+0	At1g77510	ATPDIL1-2 (PDI-LIKE 1-2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os09g0478100	AK103810.1	-	Cellulose synthase family protein	7e-2	At1g55850	ATCSLE1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os12g0409800	AK067209.1	-	Conserved hypothetical protein	5e+0	At4g37700	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-1	38	Os01g0230800	NM_188614.1	-	Hypothetical protein	2e+0	At2g19070	SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	6e-1	38	Os02g0272000	9630.m01608	-	-	6e-1	At5g18920	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-5	50	Arabidopsis thaliana	At4g05120	825857	FUR1 (FUDR RESISTANT 1)	Encodes an equilibrative nucleoside transporter AtENT3. Mutations of this locus allow mutants to grow on uridine analogue fluorouridine.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-1	38	Glycine max	GmaAffx.36878.1.S1_at	BI972157	-	-	7e-4	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	C.G.	S.X.	Please select
0.03	2e+0	34	Hordeum vulgare	HI05I11r_at	HI05I11r	-	-	4e+0	At4g05110	equilibrative nucleoside transporter, putative (ENT6)	C.G.	S.X.	Please select
0.13	2e-6	56	Populus trichocarpa	PtpAffx.212508.1.S1_at	pmrna24496	equilibrative nucleoside transporter	-	4e-5	At3g09990	equilibrative nucleoside transporter, putative (ENT2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	3e-1	38	Triticum aestivum	Ta.25142.3.S1_at	CA616288	-	-	2e-1	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	1e-7	57	Vitis vinifera	1609986_at	CB349859	hypothetical protein LOC100261396	-	6e-2	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	C.G.	S.X.	Please select
0.01	1e-1	38	Zea mays	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006810	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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