CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0555400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0555400 AK070977.1 - Hypothetical protein 9e-1 At3g11550 integral membrane family protein S.X. H.G.
0.44 58.1 Os07g0517400 NM_187402.1 - Calponin-like actin-binding domain containingprotein 2e+0 At5g35360 CAC2 S.X. H.G.
0.31 34.5 Os03g0220300 AK064657.1 - Hypothetical protein 6e-2 At1g61160 - S.X. H.G.
0.25 24.1 Os05g0569000 9633.m04629 - - 7e-1 At3g30350 unknown protein S.X. H.G.
0.17 12.6 Os02g0708500 AK106720.1 - Conserved hypothetical protein 2e-1 At4g20900 MS5 (MALE-STERILE 5) S.X. H.G.
0.10 5.7 Os10g0168100 9638.m00734 - - 8e+0 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.6 99.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.6 99.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.5 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.1 99.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.0 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-19 99 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) C.G. S.X.
0.06 9e-12 73 Os10g0135300 AK072221.1 - Cyclin-like F-box domain containing protein 2e-2 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.06 5e-10 67 Os07g0555000 AK105566.1 - Conserved hypothetical protein 7e-1 At3g21730 dihydroneopterin aldolase family protein C.G. S.X.
0.06 1e-4 50 Os07g0554600 AK072955.1 - Hypothetical protein 2e-1 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
0.04 8e-6 54 Os10g0136000 9638.m00375 - - 2e+0 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 36 Arabidopsis thaliana At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 9e-2 40 Glycine max GmaAffx.25119.1.S1_at AI443153 - - 5e-9 At3g01990 ACR6 C.G. S.X.
0.02 7e-3 42 Hordeum vulgare Contig4053_s_at Contig4053 - - 8e-3 At4g39550 kelch repeat-containing F-box family protein C.G. S.X.
0.01 3e-1 38 Populus trichocarpa PtpAffx.202447.1.S1_at pmrna4899 hypothetical protein - 3e-2 At1g54790 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.07 4e-9 63 Triticum aestivum TaAffx.38200.1.S1_at BJ245366 - - 1e+0 At5g46730 glycine-rich protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1618310_s_at CF210664 hypothetical protein LOC100259803 - 1e-1 At3g01970 WRKY45 C.G. S.X.
0.02 1e-1 38 Zea mays Zm.11666.1.A1_at BM379797 hypothetical protein LOC100277127 /// 36.4 kDa proline-rich protein - 6e+0 At3g46300 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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