CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0546100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os07g0546100 AK100024.1 - Conserved hypothetical protein 2e-2 At1g11480 eukaryotic translation initiation factor-related S.X. H.G.
0.80 94.6 Os06g0507400 AK066411.1 - BTB/POZ domain containing protein 3e-10 At3g61600 ATPOB1 S.X. H.G.
0.55 73.7 Os12g0106900 AK102466.1 - Hemopexin domain containing protein 7e-1 At3g27080 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) S.X. H.G.
0.53 71.3 Os05g0292200 AK065373.1 - Transcription factor IIA large subunit (TFIIA-L1) 3e+0 At4g14315 unknown protein S.X. H.G.
0.46 60.9 Os08g0537800 AK059388.1 - The start codon is not identified. 4e-2 At2g37600 60S ribosomal protein L36 (RPL36A) S.X. H.G.
0.26 25.6 Os09g0281600 AK067020.1 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.9 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.7 95.6 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.6 95.5 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.0 94.6 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.8 94.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.6 93.8 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
2.6 93.8 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Os10g0565700 AK122019.1 - Conserved hypothetical protein 6e+0 At5g61500 ATG3 C.G. S.X.
0.02 9e-3 44 Os01g0121100 AK071475.1 - AR401 6e-1 At3g27230 - C.G. S.X.
0.01 9e-3 44 Os06g0659600 AK110885.1 - Hypothetical protein 8e-1 At3g44950 glycine-rich protein C.G. S.X.
0.01 4e-2 42 Os03g0804900 9631.m05810 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e+0 At4g30097 unknown protein C.G. S.X.
0.01 4e-2 42 Os11g0150700 9639.m00448 - Protein kinase family protein 4e-2 At3g12690 AGC1.5 (AGC KINASE 1.5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Arabidopsis thaliana At1g11480 837691 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB - - - C.G. S.X.
0.01 1e-1 40 Glycine max PsAffx.C20000079_at PsAffx.C20000079 - - 3e-1 At3g15250 unknown protein C.G. S.X.
0.12 2e-16 87 Hordeum vulgare Contig12938_at Contig12938 - - 1e+0 At1g36920 unknown protein C.G. S.X.
0.02 3e-2 42 Populus trichocarpa PtpAffx.216869.1.S1_at pmrna31914 hypothetical protein - 1e+1 At2g33830 dormancy/auxin associated family protein C.G. S.X.
0.47 6e-163 575 Triticum aestivum Ta.6924.1.S1_at BQ744409 - - 8e-1 At2g47610 60S ribosomal protein L7A (RPL7aA) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1610232_at CA809614 hypothetical protein LOC100261227 - 2e-8 At2g19690 PLA2-BETA (PHOSPHOLIPASE A2-BETA) C.G. S.X.
0.31 4e-88 325 Zea mays Zm.9698.1.S1_at BM341610 hypothetical protein LOC100273768 - 6e-1 At5g40960 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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