CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0545400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os07g0545400 AK059228.1 - Protein H2A 4e-7 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) S.X. H.G.
0.71 89.6 Os03g0390600 AF467728.1 - Histone H3.3 5e-105 At4g40040 histone H3.2 S.X. H.G.
0.67 87.2 Os06g0130900 D10965.1 - Histone H3.3 1e-3 At4g40030 histone H3.2 S.X. H.G.
0.50 68.0 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) S.X. H.G.
0.46 60.9 Os11g0425600 AK121882.1 - Four F5 protein family protein 5e+0 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) S.X. H.G.
0.40 51.1 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.32 36.3 Os06g0681400 U37687.1 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 94.1 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
2.6 93.8 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
2.5 93.6 GSM421677 XOC, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
2.5 93.6 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.4 93.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.4 93.3 GSM99859 TCHW P2_m103 control, biological rep2 GSE4438 Expression data from rice under salinity stress
2.4 93.3 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.3 93.0 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
2.3 93.0 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
2.1 92.4 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 3e-105 383 Os12g0438000 AK071511.1 - Histone H2A 1e-4 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) C.G. S.X.
0.37 1e-101 371 Os07g0545300 AK099888.1 - Histone H2A 5e-19 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.33 4e-64 246 Os12g0530000 AK121752.1 - Histone H2A 8e-24 At1g08880 H2AXA C.G. S.X.
0.25 3e-59 230 Os03g0721900 AK064299.1 - Histone H2A 2e-8 At3g20670 HTA13 C.G. S.X.
0.18 1e-36 155 Os05g0113900 AK074018.1 - Histone H2A 2e-9 At1g08880 H2AXA C.G. S.X.
0.18 5e-30 133 Os05g0461400 AK067406.1 - Histone H2A.2.1 6e-13 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.11 2e-32 141 Os03g0279200 CA753594 - Histone H2A 1e-7 At5g02560 HTA12 C.G. S.X.
0.07 3e-6 54 Os04g0213400 9636.m01647 - - 2e+0 At1g06930 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 4e-7 56 Arabidopsis thaliana At5g54640 835553 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein. - - - C.G. S.X.
0.29 2e-25 117 Glycine max Gma.15648.1.S1_s_at CD404676 - - 4e-47 At1g51060 HTA10 C.G. S.X.
0.50 3e-130 464 Hordeum vulgare Contig3002_s_at Contig3002 - - 3e-5 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) C.G. S.X.
0.22 1e-14 81 Populus trichocarpa Ptp.1462.1.S1_s_at BU866200 histone 2 - 2e-48 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.40 4e-146 517 Triticum aestivum Ta.644.1.S1_at D38089.1 protein H2A - 2e-18 At4g27230 HTA2 (histone H2A) C.G. S.X.
0.20 3e-27 121 Vitis vinifera 1622008_at CB973055 hypothetical protein LOC100251194 - 1e-25 At1g51060 HTA10 C.G. S.X.
0.43 2e-115 414 Zea mays Zm.6714.1.A1_at CF008274 hypothetical protein LOC100194327 - 7e-3 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0051276 A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
L GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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