CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0543100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os07g0543100 9635.m03546 - Beta-amylase (EC 3.2.1.2) 6e-8 At4g15210 BAM5 (BETA-AMYLASE 5) S.X. H.G.
0.44 58.1 Os02g0559500 9630.m03370 - - 6e-1 At4g15760 MO1 (MONOOXYGENASE 1) S.X. H.G.
0.44 58.1 Os05g0177500 AU172534 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e+0 At1g78410 VQ motif-containing protein S.X. H.G.
0.40 51.1 Os02g0700400 AB074005.1 - Alternative oxidase AOX1 6e-4 At3g22370 AOX1A (ALTERNATIVE OXIDASE 1A) S.X. H.G.
0.33 38.8 Os03g0375200 9631.m02535 - - 5e-2 At1g60010 unknown protein S.X. H.G.
0.21 17.9 Os09g0460700 AK108359.1 - Esterase/lipase/thioesterase domain containingprotein 5e-1 At3g48700 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.9 98.6 GSM421724 MOCK, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.4 98.3 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.0 98.2 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.6 98.1 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.9 98.0 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM421688 XOO, 2 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.4 97.5 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 8e-80 299 Os01g0756166 NM_191281.1 - - 1e+1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.21 3e-30 135 Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - C.G. S.X.
0.13 2e-9 65 Os10g0565200 NM_197783.1 - Beta-amylase PCT-BMYI (EC 3.2.1.2) 1e-3 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.10 4e-17 91 Os10g0465700 AK067249.1 - Beta-amylase (AT3g23920/F14O13_11) 2e-11 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.09 5e-10 67 Os03g0141200 AK068968.1 - Glycoside hydrolase, family 14B, plant protein 3e-10 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 2e-6 56 Os09g0569200 AK070300.1 - Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucanmaltohydrolase) 8e-17 At4g00490 BAM2 (BETA-AMYLASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-8 59 Arabidopsis thaliana At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. - - - C.G. S.X.
0.02 1e+0 36 Glycine max PsAffx.C205000003_at PsAffx.C205000003 - - 9e-1 At5g20270 HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) C.G. S.X.
0.11 8e-12 71 Hordeum vulgare Contig1411_s_at Contig1411 - - 6e-5 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.03 5e-3 44 Populus trichocarpa Ptp.3245.1.S1_s_at CV276464 hypothetical protein - 7e-14 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.63 0 916 Triticum aestivum Ta.137.1.S1_at Y16242.1 beta-amylase - 1e-3 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.03 1e+0 34 Vitis vinifera 1610646_s_at CA813636 hypothetical protein LOC100242636 - 2e-57 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.11 5e-16 85 Zea mays Zm.80.1.A1_at CD972407 beta-amylase - 6e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0000272 The chemical reactions and pathways resulting in the breakdown of polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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