CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0541500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os07g0541500 AK111550.1 - KI domain interacting kinase 1 3e-4 At4g23190 CRK11 (CYSTEINE-RICH RLK11) S.X. H.G.
0.31 34.5 Os07g0541700 AK105128.1 - Receptor-like protein kinase 5 5e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase S.X. H.G.
0.25 24.1 Os11g0223400 AK112108.1 - Hypothetical protein 3e+0 At5g28050 cytidine/deoxycytidylate deaminase family protein S.X. H.G.
0.23 21.2 Os02g0609900 9630.m03819 - Leucine-rich repeat, typical subtype containingprotein 3e+0 At5g07280 EMS1 (EXCESS MICROSPOROCYTES1) S.X. H.G.
0.20 16.5 Os01g0359600 NM_194003.1 - - 1e-1 At1g73500 MKK9 (MAP KINASE KINASE 9) S.X. H.G.
0.11 6.5 Os01g0601700 AK072103.1 - Leucine-rich repeat, typical subtype containingprotein 6e+0 At5g67060 HEC1 (HECATE 1) S.X. H.G.
0.09 4.9 Os01g0366100 AK067903.1 - Hypothetical protein 5e-1 At1g43860 transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
139.0 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.7 99.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
15.0 98.6 GSM154950 Leaf_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
14.6 98.6 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.4 98.5 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
13.0 98.4 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.9 98.4 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.3 97.9 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
9.2 97.9 GSM154952 Leaf_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
9.2 97.9 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 2e-121 438 Os07g0541700 AK105128.1 - Receptor-like protein kinase 5 5e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.24 3e-61 238 Os07g0541400 AK111650.1 - Receptor protein kinase 3e-4 At4g23280 protein kinase, putative C.G. S.X.
0.20 8e-31 137 Os07g0541000 AK100722.1 - Receptor protein kinase 1e-9 At3g14840 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.20 2e-28 129 Os07g0537000 NM_185880.1 - Receptor protein kinase 1e-2 At4g23140 CRK6 (CYSTEINE-RICH RLK 6) C.G. S.X.
0.16 8e-25 117 Os07g0537400 NM_185885.1 - Serine/threonine kinase receptor precursor 7e-5 At4g00960 protein kinase family protein C.G. S.X.
0.11 3e-15 85 Os07g0628700 AK111594.1 - Receptor protein kinase 8e-5 At4g23200 protein kinase family protein C.G. S.X.
0.10 4e-11 71 Os07g0540100 AK101714.1 - Receptor protein kinase 1e-3 At4g05200 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Arabidopsis thaliana At4g23190 828418 CRK11 (CYSTEINE-RICH RLK11) Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) - - - C.G. S.X.
0.05 3e-2 42 Glycine max GmaAffx.76271.1.S1_at BM178547 - - 2e-6 At4g23270 protein kinase family protein C.G. S.X.
0.16 3e-24 113 Hordeum vulgare Contig6958_s_at Contig6958 - - 8e-5 At4g23190 CRK11 (CYSTEINE-RICH RLK11) C.G. S.X.
0.06 7e-3 44 Populus trichocarpa PtpAffx.32933.1.A1_at CK095109 hypothetical protein - 5e-7 At4g21390 B120 C.G. S.X.
0.12 3e-7 57 Triticum aestivum Ta.23296.2.S1_at BJ245482 - - 3e-1 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 9e-2 38 Vitis vinifera 1621903_at CF404558 UPF0497 membrane protein 15 - 2e+0 At4g09170 unknown protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.14994.1.A1_at BQ538997 hypothetical protein LOC100275284 - 1e+0 At3g13310 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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