CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0516400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 99.4 Os07g0516400 NM_187395.1 - Conserved hypothetical protein 2e+0 At5g27690 heavy-metal-associated domain-containing protein S.X. H.G.
0.54 71.9 Os09g0499300 9637.m02833 - - 8e-2 At2g39250 SNZ (SCHNARCHZAPFEN) S.X. H.G.
0.42 53.9 Os07g0193400 9635.m00919 - - 2e-3 At5g04690 - S.X. H.G.
0.38 46.9 Os08g0512100 9636.m04059 - - 6e+0 At4g16240 unknown protein S.X. H.G.
0.32 36.3 Os05g0503650 9633.m03978 - - 3e+0 At5g06040 self-incompatibility protein-related S.X. H.G.
0.32 36.3 Os03g0343100 9631.m02234 - - 3e-1 At4g34590 GBF6 (G-BOX BINDING FACTOR 6) S.X. H.G.
0.27 27.5 Os10g0479800 AK107572.1 - Protein of unknown function DUF1336 domaincontaining protein 6e-25 At2g28320 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein S.X. H.G.
0.25 24.1 Os04g0591800 9632.m04882 - - 2e+0 At2g30766 unknown protein S.X. H.G.
0.25 24.1 Os07g0526500 9635.m03382 - - 2e-1 At4g20220 - S.X. H.G.
0.25 24.1 Os01g0170800 AK101200.1 - Protein prenyltransferase domain containingprotein 9e-1 At2g21880 ATRAB7A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
173.8 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.1 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-38 159 Os07g0516500 AK061672.1 - Hypothetical protein 1e-1 At2g43760 molybdopterin biosynthesis MoaE family protein C.G. S.X.
0.02 2e-4 48 Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 C.G. S.X.
0.02 1e-3 46 Os12g0594400 9640.m03939 - - 5e-1 At2g19310 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Arabidopsis thaliana At5g27690 832831 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;PMOFBV - - - C.G. S.X.
0.05 1e-2 42 Glycine max GmaAffx.92913.1.S1_at CF807970 - - 1e+0 At3g29075 glycine-rich protein C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig26386_at Contig26386 - - 5e-2 At2g41260 M17 C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.223237.1.S1_at pmrna41126 hypothetical protein - 2e-8 At3g27010 AT-TCP20 C.G. S.X.
0.12 9e-15 81 Triticum aestivum TaAffx.12188.1.S1_at BJ295860 - - 6e+0 At5g10440 CYCD4 C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1620508_at BQ797042 similar to cysteine protease Cp5 - 3e-2 At4g08330 unknown protein C.G. S.X.
0.04 1e-2 40 Zea mays Zm.106.1.A1_at Y07781.1 glycine-rich protein3 - 4e-2 At3g06130 heavy-metal-associated domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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