CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0512200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0512200 CF292921 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) S.X. H.G.
0.73 91.1 Os01g0707300 AK104463.1 - Vesicle transport v-SNARE family protein 6e-7 At3g29100 VTI13 S.X. H.G.
0.67 87.2 Os05g0409300 AK065214.1 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) S.X. H.G.
0.67 87.2 Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein S.X. H.G.
0.60 79.7 Os02g0119400 AK102774.1 - Syntaxin 52 (AtSYP52) 4e-11 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) S.X. H.G.
0.60 79.7 Os09g0394900 AK061821.1 - Annexin-like protein 3e+0 At5g23640 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 94.1 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
2.7 94.1 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
2.5 93.6 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
2.4 93.3 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.4 93.3 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
2.3 93.0 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.2 92.7 GSM359902 FL478 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.2 92.7 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.2 92.7 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
2.1 92.4 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 1e-37 159 Os08g0191600 AK121169.1 - Autophagy 8e 9e-33 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.25 2e-42 174 Os04g0624000 AK121268.1 - Autophagy protein 8 [Contains: Apg8FG] 7e-12 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
0.01 2e-1 38 Os02g0275200 AK060517.1 - Xyloglucan fucosyltransferase family protein 4e+0 At5g55570 unknown protein C.G. S.X.
0.01 2e-1 38 Os05g0594700 AK067992.1 - Hv711N16.16 (Fragment) 6e-9 At1g62320 early-responsive to dehydration protein-related / ERD protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 2e-40 167 Arabidopsis thaliana At4g21980 828287 APG8A (AUTOPHAGY 8A) Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. - - - C.G. S.X.
0.27 7e-35 149 Glycine max Gma.9025.2.S1_s_at AI938666 - - 3e-56 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.40 1e-117 422 Hordeum vulgare Contig4088_s_at Contig4088 - - 2e-34 At4g21980 APG8A (AUTOPHAGY 8A) C.G. S.X.
0.24 8e-16 85 Populus trichocarpa Ptp.6019.2.S1_s_at CV233725 hypothetical protein - 1e-25 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.36 5e-112 404 Triticum aestivum Ta.3499.1.S1_at AF542187.1 autophagy - 8e-18 At4g21980 APG8A (AUTOPHAGY 8A) C.G. S.X.
0.32 2e-31 135 Vitis vinifera 1610715_s_at CF212007 hypothetical protein LOC100258507 - 4e-56 At2g05630 autophagy 8d (APG8d) C.G. S.X.
0.29 2e-87 321 Zea mays Zm.6669.1.A1_a_at AY104735.1 autophagy-related 8a - 5e-41 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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