CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0508200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os07g0508200 AK069914.1 - Hypothetical protein 2e-1 At1g54215 proline-rich family protein S.X. H.G.
0.73 91.1 Os05g0472300 AK071966.1 - Ribonuclease P subunit family protein 7e-1 At5g56760 ATSERAT1 S.X. H.G.
0.50 68.0 Os06g0583400 AF513382.1 - Histone deacetylase HDAC1 6e-61 At4g38130 HD1 (HISTONE DEACETYLASE 1) S.X. H.G.
0.36 44.0 Os09g0436400 AK102877.1 - PDZ/DHR/GLGF domain containing protein 6e-2 At1g46408 AGL97 (AGAMOUS-LIKE 97) S.X. H.G.
0.15 10.3 Os04g0465000 AK060688.1 - Sterile alpha motif SAM domain containing protein 3e+0 At3g48209 - S.X. H.G.
0.14 9.3 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
4.5 96.3 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
4.5 96.3 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.2 96.0 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
4.0 95.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.0 95.9 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.9 95.8 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.7 95.6 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.7 95.6 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Os03g0178800 AK058677.1 - Conserved hypothetical protein 3e+0 At5g55170 SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) C.G. S.X.
0.02 5e-3 44 Os12g0563000 9640.m03651 - Phospholipid/glycerol acyltransferase familyprotein 2e-1 At3g50250 unknown protein C.G. S.X.
0.01 4e-4 48 Os06g0133900 AB016765.1 - 5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment) 2e-35 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase C.G. S.X.
0.01 5e-3 44 Os01g0651300 AK111325.1 - GDSL-motif lipase/hydrolase-like protein 3e-2 At1g31550 GDSL-motif lipase, putative C.G. S.X.
0.01 5e-3 44 Os09g0538500 AK121538.1 - Male sterility MS5 3e-4 At3g51280 male sterility MS5, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Arabidopsis thaliana At1g54215 841862 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA - - - C.G. S.X.
0.05 2e-1 38 Glycine max Gma.10814.1.S1_at CD402301 - - 3e-8 At3g14750 unknown protein C.G. S.X.
0.54 3e-134 478 Hordeum vulgare Contig10503_at Contig10503 - - 1e-2 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.03 9e-1 36 Populus trichocarpa PtpAffx.134584.1.A1_at CV230316 - - 5e-2 At3g44950 glycine-rich protein C.G. S.X.
0.45 6e-63 242 Triticum aestivum Ta.10983.1.S1_a_at BQ166964 - - 3e+0 At3g53530 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 8e-1 34 Vitis vinifera 1617071_at CA817255 hypothetical protein LOC100242446 - 1e-1 At1g34790 TT1 (transparent testa 1) C.G. S.X.
0.11 9e-17 87 Zea mays Zm.10467.1.S1_at CA826991 hypothetical protein LOC100274742 - 1e+0 At2g27580 zinc finger (AN1-like) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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