CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0495200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os07g0495200 AK070990.1 - ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14) 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial S.X. H.G.
0.67 87.2 Os10g0320400 AK072694.1 - ATP synthase gamma chain, mitochondrial precursor(EC 3.6.3.14) 1e-48 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) S.X. H.G.
0.60 79.7 Os05g0553000 AK071143.1 - ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14) 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism S.X. H.G.
0.50 68.0 Os10g0551600 AK062858.1 - Conserved hypothetical protein 1e-13 At5g47570 unknown protein S.X. H.G.
0.50 68.0 Os08g0478200 AK068050.1 - ATP synthase D chain, mitochondrial (EC 3.6.3.14) 1e-29 At3g52300 ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) S.X. H.G.
0.50 68.0 Os05g0301700 AK070578.1 - Cytochrome c1 (Fragment) 5e-79 At3g27240 cytochrome c1, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.3 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.9 94.5 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
2.8 94.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
2.7 94.1 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.7 94.1 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.6 93.8 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
2.6 93.8 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.6 93.8 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
2.6 93.8 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-12 73 Os07g0495300 NM_187348.1 - TPR-like domain containing protein 4e+0 At5g17480 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) C.G. S.X.
0.02 2e-1 38 Os03g0666600 AK064709.1 - Conserved hypothetical protein 3e+0 At2g33520 - C.G. S.X.
0.02 9e-1 36 Os05g0527900 AK110876.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 8e-1 At3g21790 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
0.02 4e+0 34 Os02g0330000 9630.m02160 - Conserved hypothetical protein 1e+0 At3g50580 unknown protein C.G. S.X.
0.01 4e+0 34 Os01g0948200 9629.m07118 - Scarecrow-like 3 (Fragment) 8e-1 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) C.G. S.X.
0.01 4e+0 34 Os04g0125200 9632.m00260 - - 7e-7 At1g69270 RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At5g47030 834749 ATP synthase delta' chain, mitochondrial Encodes the mitochondrial ATP synthase subunit delta. - - - C.G. S.X.
0.29 5e-20 99 Glycine max Gma.11258.1.S1_at CD403347 - - 1e-1 At4g17990 unknown protein C.G. S.X.
0.58 2e-115 414 Hordeum vulgare Contig3116_at Contig3116 - - 1e-1 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
0.14 3e-9 63 Populus trichocarpa Ptp.6571.1.S1_at CN520713 - - 2e-10 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
0.54 2e-102 373 Triticum aestivum TaAffx.113229.2.S1_at CA616850 - - 2e-2 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
0.10 6e-4 44 Vitis vinifera 1613361_s_at CF211823 hypothetical protein LOC100242707 - 4e-2 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.55 1e-119 428 Zea mays Zm.17597.2.A1_s_at CK347323 ATP synthase3 /// hypothetical protein LOC100191627 /// ATP synthase delta chain - 8e+0 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
L GO:0006754 The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
L GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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