CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0489800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 93.6 Os07g0489800 AK068191.1 - Ferredoxin domain containing protein 5e-1 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) S.X. H.G.
0.86 96.4 Os02g0773500 AK062694.1 - Conserved hypothetical protein 1e-3 At5g56950 NAP1 S.X. H.G.
0.82 95.0 Os07g0105600 AK068377.1 - Photosystem II oxygen evolving complex proteinPsbQ family protein 1e-1 At5g56840 DNA-binding family protein S.X. H.G.
0.80 94.6 Os02g0578400 9630.m03520 - Photosystem II oxygen evolving complex proteinPsbQ family protein 4e-7 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein S.X. H.G.
0.80 94.6 Os03g0708500 9631.m04889 - Viral coat and capsid protein family protein 7e-3 At1g73655 FK506 binding / peptidyl-prolyl cis-trans isomerase S.X. H.G.
0.67 87.2 Os01g0676200 AK070436.1 - Conserved hypothetical protein 2e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.63 82.7 Os03g0748300 AK068519.1 - Galactose mutarotase-like domain containingprotein 5e-2 At3g15780 unknown protein S.X. H.G.
0.59 78.0 Os10g0533100 AK111957.1 - Conserved hypothetical protein 5e-1 At2g40020 - S.X. H.G.
0.48 63.7 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein S.X. H.G.
0.44 58.1 Os03g0158300 AK066591.1 - Conserved hypothetical protein 3e+0 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.8 99.8 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
32.3 99.8 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
30.8 99.7 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
26.5 99.5 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
25.0 99.5 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.5 99.3 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
21.3 99.2 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
20.7 99.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
16.0 98.7 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
15.9 98.7 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-7 57 Os02g0643600 9630.m04121 - - 9e-6 At1g12260 ANAC007 (ARABIDOPSIS NAC 007) C.G. S.X.
0.03 1e-2 42 Os01g0243600 9629.m01391 - Conserved hypothetical protein 3e-1 At1g04635 EMB1687 (EMBRYO DEFECTIVE 1687) C.G. S.X.
0.03 1e-2 42 Os04g0475400 9632.m03794 - - 1e-1 At2g41840 40S ribosomal protein S2 (RPS2C) C.G. S.X.
0.02 4e-3 44 Os01g0551600 9629.m03509 - - 1e-2 At5g57510 unknown protein C.G. S.X.
0.02 4e-3 44 Os07g0598400 AK072279.1 - Glycoside hydrolase, family 79, N-terminal domaincontaining protein 2e-1 At5g34940 AtGUS3 (Arabidopsis thaliana glucuronidase 3) C.G. S.X.
0.02 1e-2 42 Os10g0420200 AK110922.1 - IQ calmodulin-binding region domain containingprotein 5e-5 At4g11430 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 4e-3 44 Os06g0170600 9640.m02691 - BED finger domain containing protein 1e-1 At5g22570 WRKY38 C.G. S.X.
0.01 1e-2 42 Os06g0272800 9634.m01624 - Protein of unknown function DUF231 domaincontaining protein 1e-6 At5g15900 unknown protein C.G. S.X.
0.01 1e-2 42 Os11g0586800 9639.m03407 - Protein of unknown function DUF231 domaincontaining protein 5e-6 At5g15900 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-1 36 Arabidopsis thaliana At3g16250 820871 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster. - - - C.G. S.X.
0.02 6e-1 36 Glycine max PsAffx.CL503Contig1_at PsAffx.CL503Contig1 - - 3e-1 At1g71140 MATE efflux family protein C.G. S.X.
0.38 4e-92 337 Hordeum vulgare Contig9479_s_at Contig9479 - - 2e+0 At5g58470 TAF15b (TBP-ASSOCIATED FACTOR 15b) C.G. S.X.
0.04 7e-4 46 Populus trichocarpa PtpAffx.200136.1.S1_at pmrna249 hypothetical protein - 4e-2 At2g43030 ribosomal protein L3 family protein C.G. S.X.
0.32 4e-57 222 Triticum aestivum Ta.12065.1.S1_at BQ171511 - - 2e+0 At3g45000 VPS24.2 C.G. S.X.
0.04 5e-1 34 Vitis vinifera 1621896_at CF604980 hypothetical protein LOC100265858 - 1e-9 At3g05100 - C.G. S.X.
0.03 2e-1 36 Zea mays Zm.19040.1.S1_at CO521102 - - 3e+0 At2g37890 mitochondrial substrate carrier family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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