Gene omics information

Query gene ID	Os07g0414400
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os07g0414400	9635.m02202	-	-	2e+0	At3g06420	ATG8H (autophagy 8h)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	Os04g0213550	9632.m01232	-	-	6e-1	At1g54060	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os01g0967500	9629.m07296	-	-	9e-1	At3g47510	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os06g0243400	9634.m01342	-	-	6e-1	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os11g0607800	9639.m03596	-	-	5e+0	At1g27290	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os06g0243300	9634.m01340	-	-	7e+0	At5g57790	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
415.2	100.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.5	97.7	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
0.8	81.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
0.5	75.4	GSM159172	Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
0.3	69.2	GSM262019	Nipponbare, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
0.3	69.2	GSM159221	Seed (S5, 21 - 29 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
0.2	65.2	GSM154939	Root_DMSO-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice
0.2	65.2	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
0.2	65.2	GSM421713	MOCK, 4 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
0.2	65.2	GSM159216	Seed (S4, 11 - 20 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	9e-48	192	Os06g0293750	9634.m01827	-	-	5e-1	At1g02040	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	4e-16	87	Os06g0578800	9634.m03625	-	-	4e-2	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g06420	819816	ATG8H (autophagy 8h)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.psHB002xE19f_s_at	PsAffx.psHB002xE19f	-	-	7e-1	At4g12940	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	HA10F20u_x_at	HA10F20u	-	-	4e+0	At2g42240	nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.02	3e+0	34	Populus trichocarpa	PtpAffx.221586.1.S1_at	pmrna38546	hypothetical protein	-	2e-9	At3g03270	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.93022.1.S1_at	BJ235757	-	-	4e+0	At4g00130	-	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1606525_at	CB349124	hypothetical protein LOC100242311	-	5e-50	At3g62840	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.9162.1.A1_at	BM337868	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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