CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0280200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0280200 AK108656.1 - AMP-dependent synthetase and ligase domaincontaining protein 2e-2 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein S.X. H.G.
0.80 94.6 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) S.X. H.G.
0.61 81.2 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative S.X. H.G.
0.47 62.3 Os05g0593900 AK058553.1 - C13 endopeptidase NP1 precursor 5e-2 At3g20210 DELTA-VPE S.X. H.G.
0.40 51.1 Os07g0101300 AK068020.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-1 At3g18520 HDA15 S.X. H.G.
0.35 41.7 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.8 99.2 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.3 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.9 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.2 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM261999 IAC165, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.3 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-7 59 Os01g0901500 BI813803 - 4-coumarate-CoA ligase-like protein 9e-1 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.02 8e-3 44 Os03g0132000 AK105769.1 - 4-coumarate-CoA ligase-like protein 2e-5 At1g20490 AMP-dependent synthetase and ligase family protein C.G. S.X.
0.02 8e-3 44 Os05g0201700 9633.m00984 - - 6e+0 At1g78200 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e-2 42 Os01g0901800 AK070266.1 - Protein of unknown function DUF212 family protein 7e-6 At1g67600 - C.G. S.X.
0.01 8e-3 44 Os06g0534800 AK120650.1 - Ankyrin repeat containing protein 3e+0 At5g23100 unknown protein C.G. S.X.
0.01 3e-2 42 Os12g0429200 AK065546.1 - Beta-galactosidase (EC 3.2.1.23) 3e-11 At2g32810 BGAL9 (Beta galactosidase 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Arabidopsis thaliana At5g63380 836457 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. - - - C.G. S.X.
0.03 9e-2 40 Glycine max Gma.5038.1.A1_at BE023631 - - 4e-4 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.05 5e-7 56 Hordeum vulgare EBro02_SQ003_O24_at EBro02_SQ003_O24 - - 3e+0 At4g30410 transcription factor C.G. S.X.
0.08 9e-8 59 Populus trichocarpa PtpAffx.161822.1.A1_s_at CK097680 4-coumarate-coa ligase - 2e-9 At1g20480 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.17 2e-17 91 Triticum aestivum TaAffx.110883.1.S1_at CA652324 - - 2e+1 At4g26110 NAP1 C.G. S.X.
0.08 3e-10 65 Vitis vinifera 1610552_at CF201894.1 - - 5e-10 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.03 1e-1 38 Zea mays Zm.1390.1.A1_at AY106966.1 - - 3e-3 At3g21230 4CL5 (4-coumarate:CoA ligase 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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