CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0253900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 96.1 Os07g0253900 9635.m01494 - - 1e-3 At3g50550 unknown protein S.X. H.G.
0.78 93.4 Os03g0437401 9631.m03155 - - 6e-2 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) S.X. H.G.
0.74 91.4 Os02g0159300 9630.m00575 - - 7e-9 At1g15270 - S.X. H.G.
0.71 89.6 Os01g0156800 9629.m00565 - - 1e+0 At5g58650 PSY1 (plant peptide containing sulfated tyrosine 1) S.X. H.G.
0.69 87.9 Os02g0237200 9630.m01320 - - 6e+0 At3g11745 unknown protein S.X. H.G.
0.67 87.2 Os03g0402233 9631.m02813 - - 1e-1 At1g54215 proline-rich family protein S.X. H.G.
0.64 83.4 Os04g0333600 9632.m02504 - - 8e-1 At3g03826 unknown protein S.X. H.G.
0.64 83.4 Os09g0291900 9639.m04320 - - 1e+0 At1g07645 ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN) S.X. H.G.
0.63 82.7 Os04g0196800 9632.m01077 - - 2e+0 At5g17470 calmodulin-related protein, putative S.X. H.G.
0.62 81.5 Os08g0526201 9636.m04208 - - 8e-1 At2g17710 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
319.9 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 0 793 Os04g0111700 9632.m00113 - - 1e+0 At3g25100 CDC45 (cell division cycle 45) C.G. S.X.
0.49 1e-128 462 Os09g0133900 9637.m00329 - - 2e-2 At5g11930 glutaredoxin family protein C.G. S.X.
0.47 0 644 Os10g0323300 9638.m01455 - - 2e-1 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.46 2e-148 527 Os12g0289400 9640.m01891 - - 3e-1 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.45 1e-149 531 Os06g0506700 9634.m02986 - - 7e-2 At3g50550 unknown protein C.G. S.X.
0.33 4e-134 480 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 C.G. S.X.
0.30 3e-104 381 Os08g0371300 9636.m02806 - - 4e+0 At3g01100 HYP1 (HYPOTHETICAL PROTEIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-3 46 Arabidopsis thaliana At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA - - - C.G. S.X.
0.02 6e-6 54 Glycine max HgAffx.4733.1.S1_at CD748691 - - 8e-2 At5g33806 unknown protein C.G. S.X.
0.02 5e-4 46 Hordeum vulgare Contig24413_at Contig24413 - - 1e+1 At5g23411 unknown protein C.G. S.X.
0.02 2e-2 42 Populus trichocarpa PtpAffx.204524.1.S1_at pmrna8874 hypothetical protein - 4e-2 At3g50550 unknown protein C.G. S.X.
0.02 4e-3 44 Triticum aestivum TaAffx.77852.1.S1_at CA741779 - - 5e-6 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.02 3e-4 46 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.02 2e-3 44 Zea mays Zm.2031.2.A1_a_at BM072808 csu1120 protein /// metallothionein-like protein type 2 - 3e-4 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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