CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0248401

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os07g0248401 9635.m01434 - - 3e+0 At1g70400 - S.X. H.G.
0.73 91.1 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) S.X. H.G.
0.67 87.2 Os02g0451400 9630.m02380 - - 5e-2 At3g46380 unknown protein S.X. H.G.
0.57 77.0 Os03g0358500 9631.m02379 - - 3e-1 At2g14935 LCR40 (Low-molecular-weight cysteine-rich 40) S.X. H.G.
0.50 68.0 Os07g0404100 9635.m02067 - - 5e-2 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) S.X. H.G.
0.40 51.1 Os04g0280600 9632.m01942 - - 8e-7 At5g14180 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
67.7 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.9 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.9 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.8 99.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.2 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.2 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-3 44 Os02g0547800 9635.m02177 - - 3e-1 At5g26140 lysine decarboxylase family protein C.G. S.X.
0.11 2e-3 44 Os07g0412501 9635.m02177 - - 3e-1 At5g26140 lysine decarboxylase family protein C.G. S.X.
0.03 4e-4 46 Os04g0615500 9632.m05088 - Arabidopsis thaliana protein of unknown functionDUF794 family protein 4e-12 At1g64810 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) C.G. S.X.
0.03 9e-2 38 Os01g0657000 AK108727.1 - - 2e+0 At5g53250 AGP22 (ARABINOGALACTAN PROTEIN 22) C.G. S.X.
0.02 2e+0 34 Os07g0421600 9635.m02286 - - 7e-1 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.01 9e-2 38 Os01g0692300 AK120588.1 - Hypothetical protein 3e-1 At5g45870 Bet v I allergen family protein C.G. S.X.
0.01 2e+0 34 Os11g0514000 BQ906981 - Hypothetical protein 3e-1 At4g08950 EXO (EXORDIUM) C.G. S.X.
0.01 2e+0 34 Os11g0514100 9639.m02860 - Hypothetical protein 7e-4 At3g48770 ATP binding / DNA binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At1g70400 843376 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP - - - C.G. S.X.
0.06 1e+0 34 Glycine max GmaAffx.72479.1.S1_at BG043825 - - 3e+0 At2g36680 - C.G. S.X.
0.05 1e+0 32 Hordeum vulgare HF03K12r_x_at HF03K12r - - 9e+0 At4g30993 unknown protein C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.212274.1.S1_s_at pmrna24061 hypothetical protein - 1e-1 At4g30390 unknown protein C.G. S.X.
0.04 8e-1 34 Triticum aestivum Ta.8762.1.A1_at BQ162341 - - 4e+0 At5g35920 CYP79A4P C.G. S.X.
0.03 3e+0 30 Vitis vinifera 1615938_at CF208490 hypothetical protein LOC100244729 - 8e-51 At5g62700 TUB3 C.G. S.X.
0.04 1e+0 32 Zea mays Zm.738.1.A1_at AI855049 - - 4e+0 At2g20150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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