CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0245100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os07g0245100 AK100710.1 - Nitrogen fixation protein 8e-48 At5g28050 cytidine/deoxycytidylate deaminase family protein S.X. H.G.
0.60 79.7 Os02g0736400 AK065229.1 - Dihydroorotate dehydrogenase family protein 4e-24 At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein S.X. H.G.
0.50 68.0 Os03g0701200 AK099563.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.50 68.0 Os05g0542200 AK071306.1 - Epoxide hydrolase family protein 7e-2 At5g53050 hydrolase, alpha/beta fold family protein S.X. H.G.
0.47 62.3 Os02g0191300 AK069748.1 - Amino acid/polyamine transporter II family protein 4e-9 At5g38820 amino acid transporter family protein S.X. H.G.
0.13 8.2 Os05g0125500 CB660386 - Isovaleryl-CoA dehydrogenase, mitochondrialprecursor (EC 1.3.99.10) (IVD) 1e-26 At3g45300 IVD (ISOVALERYL-COA-DEHYDROGENASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.2 99.4 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
22.9 99.3 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
22.3 99.3 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
9.3 97.9 GSM159266 Salt stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
9.1 97.9 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.9 97.8 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
8.7 97.8 GSM159196 Inflorescence (P3, 5 - 10 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
6.0 97.0 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.5 96.8 GSM431935 Shoot- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 6e-124 446 Os03g0833900 AK073655.1 - Cytidine/deoxycytidylate deaminase family protein 5e-22 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.01 1e-1 40 Os05g0122400 9633.m00229 - HECT domain containing protein 4e+0 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.01 5e-1 38 Os02g0119800 AK099224.1 - Aminoalcoholphosphotransferase 5e-21 At1g13560 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) C.G. S.X.
0.01 5e-1 38 Os06g0327300 AK106368.1 - The start codon is not identified. 8e-13 At4g35460 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) C.G. S.X.
0.01 2e+0 36 Os05g0122600 AK101972.1 - Conserved hypothetical protein 3e-1 At2g01980 SOS1 (SALT OVERLY SENSITIVE 1) C.G. S.X.
0.01 2e+0 36 Os11g0208600 AK106458.1 - Hypothetical protein 4e+0 At2g29420 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 8e-48 192 Arabidopsis thaliana At5g28050 832875 cytidine/deoxycytidylate deaminase family protein F:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPA - - - C.G. S.X.
0.19 3e-20 101 Glycine max GmaAffx.90779.1.S1_s_at CF806504 - - 2e-8 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.31 3e-129 462 Hordeum vulgare Contig4793_s_at Contig4793 - - 3e-14 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.24 3e-23 111 Populus trichocarpa PtpAffx.22704.2.S1_at CV272454 hypothetical protein - 9e-45 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.24 1e-99 365 Triticum aestivum Ta.9268.1.S1_a_at CK198986 - - 7e-7 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.25 1e-34 147 Vitis vinifera 1613917_s_at CF403338 hypothetical protein LOC100248555 - 1e-1 At3g05300 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.30 3e-178 624 Zea mays Zm.7138.3.S1_x_at CK370845 cytidine deaminase-like - 1e-23 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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