CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0241900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 63.7 Os07g0241900 NM_186800.1 - - 1e+0 At1g23910 - S.X. H.G.
0.74 91.4 Os02g0707500 AK107442.1 - Conserved hypothetical protein 6e+0 At4g16240 unknown protein S.X. H.G.
0.71 89.6 Os03g0661200 9631.m04448 - - 9e-1 At3g03150 unknown protein S.X. H.G.
0.67 87.2 Os01g0668900 AK110235.1 - Conserved hypothetical protein 5e-1 At4g13160 unknown protein S.X. H.G.
0.60 79.7 Os10g0318100 NM_195619.1 - - 1e+1 At5g62330 - S.X. H.G.
0.59 78.0 Os01g0862500 AK120019.1 - IQ calmodulin-binding region domain containingprotein 3e+0 At5g23850 - S.X. H.G.
0.47 62.3 Os01g0739850 9629.m05232 - - 6e-1 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) S.X. H.G.
0.39 48.3 Os02g0524150 9630.m03070 - - 4e+0 At2g24860 chaperone protein dnaJ-related S.X. H.G.
0.35 41.7 Os12g0592700 9640.m03924 - - 2e+0 At4g20320 CTP synthase/ catalytic S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.6 99.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
39.2 99.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.0 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.0 99.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.4 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.7 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.3 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.6 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Os07g0277200 AK058657.1 - - 1e+0 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.03 1e-1 38 Os01g0806300 AK111352.1 - Conserved hypothetical protein 2e+0 At2g25780 unknown protein C.G. S.X.
0.02 1e-1 38 Os01g0806250 NM_190989.1 - - 1e+1 At4g25840 GPP1 (glycerol-3-phosphatase 1) C.G. S.X.
0.02 1e-1 38 Os11g0174700 9639.m00675 - - 5e-2 At4g33740 unknown protein C.G. S.X.
0.01 1e-1 38 Os02g0204300 AK068982.1 - Hypothetical protein 1e-1 At2g29960 CYP5 (CYCLOPHILIN 5) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P - - - C.G. S.X.
0.04 4e-1 36 Glycine max GmaAffx.70625.1.S1_at BM732315 - - 2e-1 At3g49580 LSU1 (RESPONSE TO LOW SULFUR 1) C.G. S.X.
0.04 3e-2 38 Hordeum vulgare Contig25830_at Contig25830 - - 5e+0 At3g14480 glycine/proline-rich protein C.G. S.X.
0.03 9e-2 38 Populus trichocarpa PtpAffx.214902.1.S1_at pmrna28819 hypothetical protein - 3e-1 At3g10970 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.28951.2.S1_a_at CA732834 - - 3e-1 At4g14730 transmembrane protein-related C.G. S.X.
0.07 1e+0 32 Vitis vinifera 1607133_at CB972306 hypothetical protein LOC100248153 - 2e-4 At1g68320 MYB62 (myb domain protein 62) C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1184.1.S1_at AW927978 hypothetical protein LOC100273162 - 1e-2 At2g38640 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage