CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0212200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0212200 AK071575.1 - MRNA-binding protein (Fragment) 6e-20 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) S.X. H.G.
0.83 95.8 Os06g0705100 AK119552.1 - Conserved hypothetical protein 1e-8 At4g02530 chloroplast thylakoid lumen protein S.X. H.G.
0.73 91.1 Os10g0516100 AF022731.1 - Glycine decarboxylase complex H-protein 3e-8 At1g32470 glycine cleavage system H protein, mitochondrial, putative S.X. H.G.
0.67 87.2 Os05g0401100 AK067179.1 - Protein of unknown function DUF477 family protein 6e-1 At2g37580 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 51.1 Os02g0750100 BI809899 - H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment) 4e+0 At1g47265 unknown protein S.X. H.G.
0.23 21.2 Os04g0459500 AK071685.1 - GADPH (383 AA) (Fragment) 6e-11 At1g12900 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.0 GSM431940 Shoot- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.3 97.9 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.8 97.3 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.7 97.3 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.5 97.2 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
6.1 97.1 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.9 97.0 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.4 96.8 GSM421711 MOCK, 4 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.4 96.8 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.4 96.8 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 7e-107 389 Os02g0316800 AK062767.1 - Chloroplast mRNA-binding protein CSP41 precursor(Fragment) 6e-15 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) C.G. S.X.
0.07 2e-64 248 Os02g0316900 AK070114.1 - Winged helix DNA-binding domain containing protein 4e-2 At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
0.02 6e-3 44 Os07g0585900 NM_187015.1 - - 1e-1 At3g44950 glycine-rich protein C.G. S.X.
0.01 2e-3 46 Os03g0186900 AK062232.1 - Peptidase A1, pepsin family protein 9e-7 At1g09750 chloroplast nucleoid DNA-binding protein-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-20 99 Arabidopsis thaliana At3g63140 825489 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation. - - - C.G. S.X.
0.05 5e-12 73 Glycine max Gma.1347.1.S1_at BG511746 - - 1e-10 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) C.G. S.X.
0.60 0 896 Hordeum vulgare Contig8775_at Contig8775 - - 3e-15 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.203267.1.S1_at pmrna6476 hypothetical protein - 3e-1 At4g21930 unknown protein C.G. S.X.
0.52 0 813 Triticum aestivum Ta.22762.2.S1_at CA623562 - - 1e-12 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1610212_at CF203864.1 - - 1e+0 At5g13090 unknown protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.7080.1.A1_at BM080239 hypothetical protein LOC100192783 - 2e-13 At1g57660 60S ribosomal protein L21 (RPL21E) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage