CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0208100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0208100 AK119482.1 - Polygalacturonase A (Fragment) 7e-1 At1g10640 polygalacturonase S.X. H.G.
0.55 73.7 Os01g0513900 AK103077.1 - Kinesin heavy chain (Fragment) 2e-12 At1g18370 HIK (HINKEL) S.X. H.G.
0.44 58.1 Os01g0512400 AK058757.1 - Hypothetical protein 1e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.31 34.5 Os03g0137700 AK069498.1 - Mg2+ transporter protein, CorA-like family protein 4e+0 At5g43540 zinc finger (C2H2 type) family protein S.X. H.G.
0.10 5.7 Os07g0593200 AK063361.1 - Conserved hypothetical protein 2e-2 At4g29240 leucine-rich repeat family protein / extensin family protein S.X. H.G.
0.04 2.0 Os02g0536400 AK120158.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g47295 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.7 99.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.5 99.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.2 99.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.8 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.2 99.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.8 99.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.8 99.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.6 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-17 91 Os03g0808000 9631.m05841 - Polygalacturonase PG1 7e-7 At1g02790 PGA4 (POLYGALACTURONASE 4) C.G. S.X.
0.04 2e-2 42 Os05g0279900 9633.m01818 - Polygalacturonase A (Fragment) 1e-2 At1g48100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.04 2e-2 42 Os11g0249400 9639.m01325 - Glycoside hydrolase, family 28 protein 2e-7 At3g57510 ADPG1 C.G. S.X.
0.02 6e-3 44 Os08g0327200 AK069803.1 - Glycoside hydrolase, family 28 protein 2e-1 At3g26610 polygalacturonase, putative / pectinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 36 Arabidopsis thaliana At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.78650.1.S1_at BQ628720 - - 1e+0 At2g27470 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) C.G. S.X.
0.04 4e-4 46 Hordeum vulgare Contig13013_at Contig13013 - - 1e-4 At1g80170 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.223663.1.S1_at pmrna41769 hypothetical protein - 2e-3 At1g80140 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.14 1e-8 61 Triticum aestivum TaAffx.92642.1.A1_at BJ255300 - - 3e-1 At5g39910 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1621174_at BQ796992 hypothetical protein LOC100248177 - 5e-19 At1g33490 unknown protein C.G. S.X.
0.04 2e-5 50 Zea mays Zm.1417.3.A1_a_at CF010509 - - 8e-2 At4g34960 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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