CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0194300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os07g0194300 AK062637.1 - Hypothetical protein 1e+0 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) S.X. H.G.
0.91 98.9 Os05g0398800 AK106842.1 - Protein kinase domain containing protein 1e+0 At5g45770 AtRLP55 (Receptor Like Protein 55) S.X. H.G.
0.77 93.1 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein S.X. H.G.
0.77 93.1 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein S.X. H.G.
0.67 87.2 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 S.X. H.G.
0.63 82.7 Os01g0753800 AK121555.1 - Conserved hypothetical protein 3e+0 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 98.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
14.4 98.6 GSM99882 TCHW P24_ir29 salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
10.8 98.1 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
10.7 98.1 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
10.6 98.1 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
10.1 98.0 GSM99880 TCHW P22_ir29 salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
9.5 97.9 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.6 97.5 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-3 42 Os03g0799000 AK067840.1 - Histone H1 7e-1 At5g23480 DNA binding C.G. S.X.
0.02 8e-3 42 Os05g0130100 CB634890 - Protein of unknown function DUF26 domaincontaining protein 2e-5 At5g40380 protein kinase family protein C.G. S.X.
0.02 3e-2 40 Os04g0384500 9632.m03001 - - 6e-1 At5g55570 unknown protein C.G. S.X.
0.02 3e-2 40 Os09g0323200 9637.m01274 - - 3e+0 Atmg01350 - C.G. S.X.
0.01 8e-3 42 Os03g0840200 AK067797.1 - TolB, C-terminal domain containing protein 1e-3 At1g21680 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.61043.1.S1_at BU964843 - - 3e+0 At5g43430 ETFBETA C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig26206_at Contig26206 - - 7e-2 At4g21620 glycine-rich protein C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.205522.1.S1_at pmrna10914 hypothetical protein - 3e-1 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.04 4e-3 42 Triticum aestivum TaAffx.5885.1.S1_at CA696677 - - 8e-1 At4g17440 unknown protein C.G. S.X.
0.03 2e+1 28 Vitis vinifera 1622604_s_at CF608398 - - 1e+0 At4g18660 unknown protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.3038.1.A1_x_at CD650726 ripening-related protein - 1e+0 At2g12905 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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