CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0187400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.95 99.6 Os07g0187400 9635.m00855 - AAA ATPase domain containing protein 4e-34 At3g10420 sporulation protein-related S.X. H.G.
0.33 38.8 Os10g0209700 AK070579.1 - Heavy metal transport/detoxification proteindomain containing protein 6e-1 At5g63530 ATFP3 S.X. H.G.
0.31 34.5 Os05g0502500 AK060111.1 - Conserved hypothetical protein 8e+0 At4g29960 unknown protein S.X. H.G.
0.27 27.5 Os09g0250700 AK120335.1 - ABC-1 domain containing protein 4e-19 At3g07700 ABC1 family protein S.X. H.G.
0.22 19.4 Os08g0558200 AK069761.1 - - 8e-13 At5g03880 electron carrier S.X. H.G.
0.22 19.4 Os09g0460400 AK067180.1 - Esterase/lipase/thioesterase domain containingprotein 9e+0 At5g06570 hydrolase S.X. H.G.
0.22 19.4 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein S.X. H.G.
0.21 17.9 Os08g0163400 AB005290.1 - Sigma-70 factor family protein 7e-5 At1g75550 glycine-rich protein S.X. H.G.
0.15 10.3 Os01g0913000 AF022741.1 - - 2e-6 At5g16400 ATF2 S.X. H.G.
0.12 7.2 Os03g0152600 AK109525.1 - Conserved hypothetical protein 4e-20 At2g36895 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.4 99.0 GSM421724 MOCK, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.2 98.8 GSM421725 MOCK, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.2 98.4 GSM421694 XOO, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.3 98.3 GSM421685 XOC, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4 98.1 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.8 98.0 GSM421674 XOC, 4 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.7 98.0 GSM421684 XOC, 96 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
9.6 97.9 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM421682 XOC, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-12 75 Os06g0155600 AK101138.1 - Peptidase S16, lon protease family protein 1e+0 At3g10420 sporulation protein-related C.G. S.X.
0.02 3e-2 42 Os11g0599500 9639.m03514 - DEAD-box protein 3, Y-chromosomal 4e-40 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.01 3e-2 42 Os11g0160400 AK109030.1 - Hypothetical protein 4e-2 At3g53650 histone H2B, putative C.G. S.X.
0.01 1e-1 40 Os08g0517800 9636.m04110 - Thaumatin, pathogenesis-related family protein 6e-4 At4g38670 pathogenesis-related thaumatin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-34 147 Arabidopsis thaliana At3g10420 820206 sporulation protein-related F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF - - - C.G. S.X.
0.09 6e-6 54 Glycine max Gma.17408.1.S1_at BE057084 - - 8e-3 At3g10420 sporulation protein-related C.G. S.X.
0.65 0 989 Hordeum vulgare Contig8666_at Contig8666 - - 1e-30 At3g10420 sporulation protein-related C.G. S.X.
0.20 2e-43 178 Populus trichocarpa PtpAffx.209432.1.S1_at pmrna18676 hypothetical protein - 3e-145 At3g10420 sporulation protein-related C.G. S.X.
0.23 8e-91 335 Triticum aestivum Ta.18848.1.S1_at CA643030 - - 6e+0 At3g01940 unknown protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1614169_at CB970892 - - 1e+0 Atmg00610 - C.G. S.X.
0.01 1e-1 38 Zea mays Zm.18148.1.A1_at CN844779 - - 5e+0 At2g21320 zinc finger (B-box type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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