CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0176600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os07g0176600 AK067073.1 - Protein kinase domain containing protein 1e-12 At3g04810 ATNEK2 (NIMA-RELATED KINASE 2) S.X. H.G.
0.17 12.6 Os03g0761900 AK109047.1 - 2OG-Fe(II) oxygenase domain containing protein 1e-11 At4g33910 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.07 3.7 Os02g0170900 AK111491.1 - Conserved hypothetical protein 2e-5 At1g16290 - S.X. H.G.
0.05 2.5 Os01g0579600 AK100352.1 - Calcium-binding EF-hand domain containing protein 1e-4 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) S.X. H.G.
0.04 2.0 Os11g0118800 AK120973.1 - Hypothetical protein 5e-8 At5g01970 unknown protein S.X. H.G.
0.04 2.0 Os04g0586700 AK063488.1 - Zn-finger, RING domain containing protein 7e-1 At3g50580 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.5 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.0 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
15.7 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 9e-74 280 Os03g0636800 AK073129.1 - LSTK-1-like kinase 5e-31 At3g04810 ATNEK2 (NIMA-RELATED KINASE 2) C.G. S.X.
0.32 5e-35 151 Os12g0604700 AK072382.1 - LSTK-1-like kinase 1e-15 At3g63280 ATNEK4 (NIMA-RELATED KINASE 4) C.G. S.X.
0.05 1e-4 50 Os01g0864700 AU172991 - Protein kinase domain containing protein 3e-51 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") C.G. S.X.
0.04 2e-3 46 Os02g0590800 AK060204.1 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) C.G. S.X.
0.02 4e-5 52 Os05g0440800 AK073901.1 - Protein kinase domain containing protein 5e-53 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") C.G. S.X.
0.01 2e-3 46 Os02g0590700 AK100917.1 - Conserved hypothetical protein 4e-2 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-12 75 Arabidopsis thaliana At3g04810 819641 ATNEK2 (NIMA-RELATED KINASE 2) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. - - - C.G. S.X.
0.07 4e-4 48 Glycine max GmaAffx.64644.1.S1_at AW348952 - - 2e-9 At3g63280 ATNEK4 (NIMA-RELATED KINASE 4) C.G. S.X.
0.05 3e-2 40 Hordeum vulgare Contig9144_at Contig9144 - - 1e-15 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) C.G. S.X.
0.07 4e-4 48 Populus trichocarpa PtpAffx.205021.1.S1_at pmrna9940 hypothetical protein - 3e-148 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") C.G. S.X.
0.37 2e-162 573 Triticum aestivum TaAffx.120067.1.S1_at BJ245595 - - 1e-23 At5g28290 ATNEK3 (NIMA-RELATED KINASE3) C.G. S.X.
0.03 3e-1 36 Vitis vinifera 1621574_at CF511059 hypothetical protein LOC100241803 - 3e-2 At5g28290 ATNEK3 (NIMA-RELATED KINASE3) C.G. S.X.
0.35 1e-38 161 Zea mays Zm.4277.2.S1_a_at BQ704082 - - 5e-17 At1g54510 ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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