CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0171300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0171300 AK100663.1 - Protein kinase domain containing protein 4e-53 At3g03940 protein kinase family protein S.X. H.G.
0.22 19.4 Os09g0249700 AK069757.1 - Protein phosphatase 2A A subunit (Phosphatase 2Aregulatory A subunit) 3e-87 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) S.X. H.G.
0.12 7.2 Os03g0711200 AK063479.1 - Phosphatidylinositol 4-kinase alpha (Fragment) 2e-11 At1g51040 phosphatidylinositol 4-kinase, putative S.X. H.G.
0.11 6.5 Os02g0135800 AB055156.1 - Sec13-like protein (Fragment) 6e-11 At2g30050 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.08 4.2 Os01g0920400 AK073965.1 - Dynamin family protein 1e-13 At4g33650 DRP3A (DYNAMIN-RELATED PROTEIN 3A) S.X. H.G.
0.06 3.0 Os01g0253100 AK067133.1 - Pto kinase interactor 1 6e-12 At4g02010 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.8 97.3 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
5.0 96.6 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.9 96.5 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.8 96.5 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.7 96.4 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.1 96.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.0 95.9 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 6e-180 632 Os03g0793500 AK121620.1 - Casein kinase-like protein 4e-38 At3g03940 protein kinase family protein C.G. S.X.
0.46 2e-106 389 Os01g0772600 AK120893.1 - Casein kinase-like protein 6e-43 At3g03940 protein kinase family protein C.G. S.X.
0.18 2e-10 69 Os05g0200500 AK100357.1 - Serine/threonine protein kinase 3e-38 At2g25760 protein kinase family protein C.G. S.X.
0.16 1e-8 63 Os01g0198200 NM_188260.1 - Casein kinase-like protein 2e-38 At2g25760 protein kinase family protein C.G. S.X.
0.06 5e-11 71 Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 4e-53 210 Arabidopsis thaliana At3g03940 819551 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.35 1e-38 163 Glycine max GmaAffx.56354.1.S1_at BI701773 - - 3e-51 At5g18190 protein kinase family protein C.G. S.X.
0.42 3e-148 525 Hordeum vulgare Contig7579_at Contig7579 - - 1e-57 At3g03940 protein kinase family protein C.G. S.X.
0.31 1e-38 163 Populus trichocarpa Ptp.5140.1.S1_s_at BU822372 hypothetical protein - 2e-117 At5g18190 protein kinase family protein C.G. S.X.
0.38 4e-115 416 Triticum aestivum Ta.5905.2.S1_at CA663980 - - 5e-30 At3g03940 protein kinase family protein C.G. S.X.
0.17 3e-39 163 Vitis vinifera 1611182_at CF512709 hypothetical protein LOC100267624 - 2e-20 At3g03930 protein kinase-related C.G. S.X.
0.58 0 999 Zea mays Zm.6736.1.S1_at AY108079.1 ATP binding protein - 1e-37 At3g03940 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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