CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0170300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0170300 AK072392.1 - YT521-B-like protein family protein 2e-18 At3g13460 ECT2 S.X. H.G.
0.67 87.2 Os02g0123300 CR288006 - Eukaryotic translation initiation factor 3 subunit8 (eIF3 p110) (eIF3c) (p105) 9e-1 At5g67620 unknown protein S.X. H.G.
0.55 73.7 Os07g0124500 BI813160 - Eukaryotic translation initiation factor 3 subunit8 (eIF3 p110) (eIF3c) 1e+0 At3g13370 unknown protein S.X. H.G.
0.55 73.7 Os03g0735100 BM422113 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 1e+0 At5g46700 TRN2 (TORNADO 2) S.X. H.G.
0.55 73.7 Os05g0150900 AK099789.1 - - 3e-32 At3g02760 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding S.X. H.G.
0.33 38.8 Os07g0435400 AK111603.1 - WD40-like domain containing protein 1e-6 At2g40360 transducin family protein / WD-40 repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.1 96.6 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.5 96.3 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM67053 FL478 control replicate 2 GSE3053 Rice salt expression
4.4 96.2 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.4 96.2 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
4.4 96.2 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.3 96.1 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.1 96.0 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.1 96.0 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
3.7 95.6 GSM67061 IR29 salt stressed replicate 2 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-15 85 Os03g0158500 AK119641.1 - YT521-B-like protein family protein 1e-19 At1g55500 ECT4 C.G. S.X.
0.09 7e-16 87 Os03g0748000 AK101299.1 - YT521-B-like protein family protein 3e-14 At3g13460 ECT2 C.G. S.X.
0.06 7e-13 77 Os01g0679900 AK120262.1 - YTH domain protein 2 (High-glucose-regulatedprotein 8) (NY-REN-2 antigen) (CLL-associated antigenKW-14). Splice isoform 2 4e-10 At1g79270 ECT8 (evolutionarily conserved C-terminal region 8) C.G. S.X.
0.06 2e-6 56 Os08g0224200 AK101331.1 - YTH domain protein 2 (High-glucose-regulatedprotein 8) (NY-REN-2 antigen) (CLL-associated antigenKW-14). Splice isoform 2 1e-21 At3g13060 - C.G. S.X.
0.04 3e-9 65 Os08g0556000 AK068463.1 - YT521-B-like protein family protein 9e-45 At3g13060 - C.G. S.X.
0.02 6e-7 57 Os03g0317000 AK099818.1 - YT521-B-like protein family protein 2e-13 At3g13460 ECT2 C.G. S.X.
0.01 1e-2 44 Os10g0569300 AK072459.1 - Putative methyltransferase DUF248 family protein 3e-10 At1g26850 dehydration-responsive family protein C.G. S.X.
0.01 2e-1 40 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-18 95 Arabidopsis thaliana At3g13460 820548 ECT2 Physically interacts with CIPK1. - - - C.G. S.X.
0.08 1e-4 50 Glycine max Gma.11315.1.S1_at BI425375 - - 2e-58 At1g55500 ECT4 C.G. S.X.
0.28 2e-81 303 Hordeum vulgare Contig3785_at Contig3785 - - 4e-11 At1g55500 ECT4 C.G. S.X.
0.19 6e-31 137 Populus trichocarpa Ptp.5258.1.S1_s_at BI072527 hypothetical protein - 3e-59 At3g13460 ECT2 C.G. S.X.
0.22 5e-74 280 Triticum aestivum Ta.22930.1.S1_a_at CK207807 - - 6e-12 At1g55500 ECT4 C.G. S.X.
0.13 5e-34 145 Vitis vinifera 1621659_at BQ798789 hypothetical protein LOC100253534 - 5e-52 At1g55500 ECT4 C.G. S.X.
0.31 1e-152 539 Zea mays Zm.17112.1.A1_at CA401004 hypothetical protein LOC100191952 - 8e-14 At5g61020 ECT3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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