CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0154100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os07g0154100 AK119780.1 - The start codon is not identified. 3e-4 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) S.X. H.G.
0.67 87.2 Os07g0687900 D26537.1 - WSI76 protein induced by water stress 4e-24 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) S.X. H.G.
0.63 82.7 Os01g0121600 BI807193 - Conserved hypothetical protein 2e+0 At2g32890 RALFL17 (RALF-LIKE 17) S.X. H.G.
0.63 82.7 Os09g0325700 AK063334.1 - Protein phosphatase 2C (EC 3.1.3.16) (PP2C) 7e-1 At5g06210 RNA-binding protein, putative S.X. H.G.
0.46 60.9 Os12g0478200 AK063578.1 - GRAM domain containing protein 4e-4 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.40 51.1 Os03g0125100 9631.m00248 - Beta-carotene hydroxylase 1e-11 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
83.9 100.0 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
59.1 99.9 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
57.8 99.9 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
55.7 99.9 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
16.4 98.8 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
11.1 98.2 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.5 98.1 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM159267 Salt stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
8.3 97.7 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
8.3 97.7 GSM278852 KT95-418-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-40 169 Os12g0617400 AK107649.1 - The start codon is not identified. 3e-12 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.08 2e-46 188 Os06g0572766 9634.m03579 - - 7e+0 At5g17810 WOX12 (WUSCHEL related homeobox 12) C.G. S.X.
0.06 1e-7 59 Os02g0704000 AK064824.1 - Zeaxanthin cleavage oxygenase 4e+0 At4g19170 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) C.G. S.X.
0.01 9e-3 44 Os05g0546800 AK067522.1 - Conserved hypothetical protein 3e+0 At4g16140 proline-rich family protein C.G. S.X.
0.01 3e-2 42 Os12g0563000 9640.m03651 - Phospholipid/glycerol acyltransferase familyprotein 2e-1 At3g50250 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-4 48 Arabidopsis thaliana At3g14440 820667 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. - - - C.G. S.X.
0.12 2e-9 65 Glycine max Gma.12393.1.S1_a_at BM093715 - - 2e-17 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
0.07 9e-6 52 Hordeum vulgare Contig4988_at Contig4988 - - 2e-2 At4g19170 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.222884.1.S1_at pmrna40591 hypothetical protein - 5e+0 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.12 6e-18 93 Triticum aestivum TaAffx.76007.1.S1_at CA731387 - - 1e-1 At2g03440 nodulin-related C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1607927_at CF568820 - - 4e+0 At2g32835 RALFL16 (RALF-LIKE 16) C.G. S.X.
0.41 1e-112 406 Zea mays Zm.463.1.A1_at U95953.1 viviparous14 - 5e-6 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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