Gene omics information

Query gene ID	Os07g0142600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.7	Os07g0142600	AK062842.1	-	Conserved hypothetical protein	1e+0	At2g07363	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.92	99.1	Os08g0478000	AK059493.1	-	Conserved hypothetical protein	4e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.86	96.4	Os07g0599900	CF291190	-	Conserved hypothetical protein	1e-1	At5g09530	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os05g0245300	AB091471.1	-	Protein of unknown function DUF588 family protein	7e+0	Atcg00790	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os07g0599700	AK065663.1	-	Surface protein PspC	6e+0	At5g09480	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os07g0142300	AK108823.1	-	Conserved hypothetical protein	7e+0	At4g30730	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os01g0827300	AK071929.1	-	Laccase precursor (EC 1.10.3.2)	7e-5	At2g30210	LAC3 (laccase 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.1	99.5	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
16.7	98.8	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
16.4	98.8	GSM359917	IR63731 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
14.2	98.5	GSM262003	IAC165, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.3	98.4	GSM359923	Pokkali root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.4	98.2	GSM262010	Nipponbare, 2 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.4	98.1	GSM262011	Nipponbare, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.6	97.8	GSM359911	IR29 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
8.5	97.7	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.5	97.7	GSM159179	Root, 7-day-old Seedling, biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-14	79	Os07g0142200	AK108897.1	-	Conserved hypothetical protein	2e+0	At4g16980	arabinogalactan-protein family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	3e-9	63	Os07g0142300	AK108823.1	-	Conserved hypothetical protein	7e+0	At4g30730	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3e-6	54	Os04g0521900	AK105173.1	-	Conserved hypothetical protein	2e+0	At3g15630	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-5	50	Os12g0208900	9640.m01003	-	ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein	4e-2	At1g69600	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-2	40	Os07g0674800	AY297447.1	-	AP2 domain containing protein RAP2.2 (Fragment)	8e-3	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-2	40	Os01g0852200	AK063954.1	-	Major facilitator superfamily protein	5e-9	At3g46980	transporter-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os12g0492900	AK106832.1	-	Cyclin-like F-box domain containing protein	1e+0	At3g01513	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g07363	6241451	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	Gma.10959.3.A1_at	BU762593	-	-	4e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.12	2e-1	36	Hordeum vulgare	Contig14279_at	Contig14279	-	-	6e+0	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	C.G.	S.X.	Please select
0.03	1e-1	38	Populus trichocarpa	PtpAffx.141004.1.A1_at	CV236761	hypothetical protein	-	7e+0	At5g51040	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-1	38	Triticum aestivum	TaAffx.112080.1.S1_s_at	CA627251	-	-	1e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	C.G.	S.X.	Please select
0.04	7e-3	40	Vitis vinifera	1615232_at	CF512532	-	-	8e-1	At1g61415	unknown protein	C.G.	S.X.	Please select
0.07	6e-1	34	Zea mays	Zm.16894.1.A1_at	AY104715.1	verprolin	-	4e-1	At5g37720	RNA and export factor-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006810	The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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