Gene omics information

Query gene ID	Os07g0142300
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os07g0142300	AK108823.1	-	Conserved hypothetical protein	7e+0	At4g30730	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os08g0478000	AK059493.1	-	Conserved hypothetical protein	4e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os07g0142200	AK108897.1	-	Conserved hypothetical protein	2e+0	At4g16980	arabinogalactan-protein family	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os07g0142600	AK062842.1	-	Conserved hypothetical protein	1e+0	At2g07363	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os07g0599900	CF291190	-	Conserved hypothetical protein	1e-1	At5g09530	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os05g0245300	AB091471.1	-	Protein of unknown function DUF588 family protein	7e+0	Atcg00790	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	98.5	GSM262011	Nipponbare, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.2	98.4	GSM359911	IR29 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.1	98.3	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.0	98.3	GSM359906	FL478 root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.6	98.2	GSM262003	IAC165, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.3	98.2	GSM359922	Pokkali root, salt-treated, biological replicate 1	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.9	98.1	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.6	98.1	GSM261998	IAC165, 2 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.4	98.1	GSM359923	Pokkali root, salt-treated, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
9.9	98.0	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	4e-89	329	Os07g0142200	AK108897.1	-	Conserved hypothetical protein	2e+0	At4g16980	arabinogalactan-protein family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	4e-9	63	Os07g0142600	AK062842.1	-	Conserved hypothetical protein	1e+0	At2g07363	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	6e-5	50	Os04g0521900	AK105173.1	-	Conserved hypothetical protein	2e+0	At3g15630	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-2	40	Os10g0400500	9638.m02222	-	Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5)(Fragment)	1e-2	At1g79780	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os03g0392900	9631.m02717	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	2e-1	38	Os06g0166400	BI118737	-	Dehydration responsive element binding protein 1D(DREB1D protein) (C- repeat binding factor 4)(C-repeat/dehydration responsive element binding factor4) (CRT/DRE binding factor 4)	1e+0	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	38	Os12g0604000	AK067588.1	-	Hypothetical protein	6e-3	At5g24580	copper-binding family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At4g30730	829196	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	PsAffx.CL147Contig2_s_at	PsAffx.CL147Contig2	-	-	2e-1	At1g75580	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.14	2e-7	56	Hordeum vulgare	Contig14279_at	Contig14279	-	-	6e+0	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	C.G.	S.X.	Please select
0.02	2e+0	34	Populus trichocarpa	PtpAffx.89053.1.A1_at	CV240797	hypothetical protein	-	2e+0	At3g53220	thioredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	5e-4	46	Triticum aestivum	TaAffx.128633.1.S1_x_at	CK214670	-	-	6e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1615048_at	CA816728	-	-	1e+0	At5g53588	CPuORF50 (Conserved peptide upstream open reading frame 50)	C.G.	S.X.	Please select
0.12	7e-1	34	Zea mays	Zm.17632.1.A1_at	CK370036	-	-	7e+0	At4g16215	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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