CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0124700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os07g0124700 AK109848.1 - ANT (Ovule development protein aintegumenta) 3e-6 At1g72570 DNA binding / transcription factor S.X. H.G.
0.43 55.4 Os05g0578900 AK101287.1 - Zn-finger, GATA type domain containing protein 4e-2 At3g06740 zinc finger (GATA type) family protein S.X. H.G.
0.22 19.4 Os03g0622100 AK063506.1 - Transcriptional factor B3 family protein 7e-1 At4g25320 DNA-binding protein-related S.X. H.G.
0.13 8.2 Os05g0584400 AK106631.1 - Conserved hypothetical protein 2e+0 At5g55570 unknown protein S.X. H.G.
0.09 4.9 Os03g0192300 9631.m00870 - Protein of unknown function DUF966 family protein 2e+0 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) S.X. H.G.
0.00 0.1 Os04g0472700 9632.m03763 - Conserved hypothetical protein 2e+0 At5g42770 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.5 99.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.2 99.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.9 99.6 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
23.9 99.4 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
23.8 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
21.8 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-54 214 Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.16 5e-47 190 Os06g0657500 AK101959.1 - ANT (Ovule development protein aintegumenta) 3e-10 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
0.15 5e-41 171 Os02g0614300 AK112070.1 - ANT (Ovule development protein aintegumenta) 5e-20 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 3e-6 54 Arabidopsis thaliana At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV - - - C.G. S.X.
0.12 8e-14 79 Glycine max GmaAffx.29044.1.S1_at BU551115 - - 1e-44 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.03 2e-2 40 Hordeum vulgare Contig477_at Contig477 - - 1e+0 At4g10970 unknown protein C.G. S.X.
0.21 4e-6 54 Populus trichocarpa PtpAffx.214377.1.S1_s_at pmrna27977 AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor - 1e-24 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.05 2e-10 67 Triticum aestivum TaAffx.64176.1.S1_at BJ312281 - - 8e-11 At1g72570 DNA binding / transcription factor C.G. S.X.
0.11 1e-18 93 Vitis vinifera 1610205_at CF510900 hypothetical protein LOC100252316 - 4e-34 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.18 6e-49 194 Zea mays Zm.123.1.S1_at AY109146.1 heat shock complementing factor1 - 2e-5 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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