CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os07g0105900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 S.X. H.G.
0.56 76.3 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.50 68.0 Os08g0433400 AK059468.1 - Myb, DNA-binding domain containing protein 2e-20 At3g01140 MYB106 (myb domain protein 106) S.X. H.G.
0.47 62.3 Os12g0274200 AK063071.1 - Lipolytic enzyme, G-D-S-L family protein 8e-6 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.44 58.1 Os07g0159700 9635.m00597 - Protein kinase domain containing protein 3e-2 At3g17420 GPK1 S.X. H.G.
0.21 17.9 Os08g0550500 AK058423.1 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.0 99.2 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
14.4 98.6 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
12.0 98.3 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
11.9 98.3 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
11.8 98.3 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.7 98.2 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.5 98.2 GSM67052 FL478 control replicate 1 GSE3053 Rice salt expression
10.1 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM67060 IR29 salt stressed replicate 1 GSE3053 Rice salt expression
9.8 98.0 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-4 48 Os01g0971200 AK064075.1 - Conserved hypothetical protein 4e-12 At2g28310 unknown protein C.G. S.X.
0.02 2e-3 46 Os02g0768300 AK073339.1 - Protein of unknown function DUF6 domain containingprotein 2e-4 At1g21890 nodulin MtN21 family protein C.G. S.X.
0.02 2e-3 46 Os12g0481900 9640.m02867 - - 2e-2 At2g25190 unknown protein C.G. S.X.
0.02 6e-3 44 Os07g0609500 9635.m04190 - - 2e-3 At4g09462 - C.G. S.X.
0.01 2e-3 46 Os06g0608800 AK099238.1 - Copine domain containing protein 3e-16 At3g01650 RGLG1 (RING domain Ligase1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Arabidopsis thaliana At2g22430 816775 ATHB6 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis. - - - C.G. S.X.
0.03 2e-2 42 Glycine max GmaAffx.76770.1.S1_at BU761828 - - 9e-1 At1g48440 unknown protein C.G. S.X.
0.02 6e-3 42 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.8607.4.S1_at CV262386 - - 4e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.15 4e-12 73 Triticum aestivum Ta.7073.1.S1_at BJ314861 - - 1e+0 At1g04760 ATVAMP726 C.G. S.X.
0.03 6e-2 38 Vitis vinifera 1622507_at CB975105 - - 6e-20 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.02 8e-2 38 Zea mays ZmAffx.1083.1.S1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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