CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0715900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os06g0715900 9634.m04905 - - 9e-1 At4g18330 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative S.X. H.G.
0.73 91.1 Os12g0408900 9640.m02078 - - 5e-1 At5g67510 60S ribosomal protein L26 (RPL26B) S.X. H.G.
0.67 87.2 Os04g0371600 9632.m02874 - Leucine-rich repeat, cysteine-containingcontaining protein 2e+0 At5g20230 ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN) S.X. H.G.
0.67 87.2 Os07g0412000 NM_187825.1 - - 6e-1 At5g10390 histone H3 S.X. H.G.
0.55 73.7 Os08g0527900 9636.m04228 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 3e-1 At3g49540 unknown protein S.X. H.G.
0.50 68.0 Os05g0488400 9633.m03830 - - 1e-1 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.8 99.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.3 99.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.2 99.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.4 99.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.3 99.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.5 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.4 99.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-17 91 Os10g0523300 NM_197423.1 - - 6e-1 At5g46720 - C.G. S.X.
0.04 2e-12 75 Os11g0291200 9639.m01730 - - 2e-1 At5g62998 unknown protein C.G. S.X.
0.04 5e-4 48 Os10g0174700 NM_195126.1 - - 1e-2 At5g62260 DNA binding C.G. S.X.
0.04 2e-3 46 Os07g0417800 AK120134.1 - Galactosyl transferase family protein 2e-3 At5g04280 glycine-rich RNA-binding protein C.G. S.X.
0.04 3e-2 42 Os04g0186300 9632.m00947 - - 1e+0 At5g43755 - C.G. S.X.
0.04 5e-1 38 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein C.G. S.X.
0.03 2e-6 56 Os12g0156200 AY333186.1 - DNA-binding factor of bZIP class 9e-1 At3g18260 reticulon family protein (RTNLB9) C.G. S.X.
0.01 5e-1 38 Os01g0752700 CB634979 - Protein synthesis factor, GTP-binding domaincontaining protein 8e-42 At2g31060 elongation factor family protein C.G. S.X.
0.01 5e-1 38 Os02g0728500 AK073972.1 - Receptor protein kinase-like protein 6e-9 At4g30520 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 36 Arabidopsis thaliana At4g18330 827559 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative F:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:unknown;BOMFPA - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.49094.2.S1_at BM526856 - - 5e-27 At4g12610 transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein C.G. S.X.
0.02 5e-1 36 Hordeum vulgare Contig21409_at Contig21409 - - 9e-1 At1g19610 PDF1.4 C.G. S.X.
0.01 3e-1 38 Populus trichocarpa PtpAffx.23892.1.S1_at CX168056 hypothetical protein - 3e-1 At5g64620 C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2) C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.82118.1.S1_at CA677364 - - 3e-1 At1g65880 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1614635_at CF519142 hypothetical protein LOC100250791 - 8e-2 At3g28540 AAA-type ATPase family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.12991.1.A1_at CA402944 - - 8e-2 At3g28230 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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