CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0714600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os06g0714600 AU223447 - Ras GTPase family protein 1e-2 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) S.X. H.G.
0.67 87.2 Os08g0533300 9636.m04276 - Amino acid-binding ACT domain containing protein 3e-3 At5g65890 ACR1 (ACT Domain Repeat 1) S.X. H.G.
0.63 82.7 Os09g0486700 AK105294.1 - Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin) 6e-5 At3g20830 protein kinase family protein S.X. H.G.
0.38 46.9 Os06g0691800 AK065392.1 - - 1e-4 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.36 44.0 Os08g0167000 9636.m00636 - ABC transporter related domain containing protein 2e-8 At1g31770 ABC transporter family protein S.X. H.G.
0.35 41.7 Os09g0423400 AK072133.1 - Biopterin transport-related protein BT1 familyprotein 3e-4 At5g10820 integral membrane transporter family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
83.2 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
76.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM100443 Rice Bala 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.1 97.7 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.8 97.6 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.4 97.5 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.3 97.2 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.3 97.2 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
6.3 97.2 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
6.2 97.1 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-44 180 Os09g0527600 AK111543.1 - GTP-binding protein (Fragment) 2e-10 At1g01200 ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) C.G. S.X.
0.20 2e-25 117 Os08g0525000 AK103220.1 - Ras GTPase family protein 1e-41 At2g43130 ARA4 C.G. S.X.
0.14 1e-20 101 Os01g0667600 AK111561.1 - Ras-related protein Rab11B 1e-20 At1g28550 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) C.G. S.X.
0.11 5e-20 99 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C C.G. S.X.
0.11 7e-10 65 Os10g0377400 AK111872.1 - Ras-related protein Rab11D 7e-10 At4g39990 RABA4B (RAB GTPASE HOMOLOG A4B) C.G. S.X.
0.05 4e-4 46 Os09g0327100 AK071461.1 - - 2e-31 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
0.04 3e-2 40 Os01g0714900 AK111495.1 - RAB7A 7e-22 At4g09720 Ras-related GTP-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-2 40 Arabidopsis thaliana At3g46830 823836 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV - - - C.G. S.X.
0.06 7e-2 38 Glycine max Gma.16259.2.S1_a_at BM269593 - - 2e-29 At2g43130 ARA4 C.G. S.X.
0.10 4e-4 44 Hordeum vulgare Contig21364_at Contig21364 - - 3e+0 At5g07170 unknown protein C.G. S.X.
0.07 3e-4 46 Populus trichocarpa Ptp.3321.1.S1_at DN486078 - - 2e-15 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.13 6e-11 67 Triticum aestivum TaAffx.52820.1.S1_at CA700528 - - 2e-2 At1g01200 ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) C.G. S.X.
0.07 6e-2 36 Vitis vinifera 1615231_at CF607773 hypothetical protein LOC100254995 - 1e-19 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) C.G. S.X.
0.10 2e-12 71 Zea mays Zm.2283.1.A1_at BF728022 ras-related protein Rab11C - 1e-10 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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