Gene omics information

Query gene ID	Os06g0700000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.7	Os06g0700000	AK102835.1	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	1e-53	At2g19170	SLP3	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os05g0526400	CR284436	-	Reticulon family protein	4e+0	At3g10260	reticulon family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.69	87.9	Os02g0767000	AK122109.1	-	Remorin, C-terminal region domain containingprotein	1e-9	At4g36970	remorin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os05g0555100	AJ272423.1	-	Protein phosphatase 2A B'kappa subunit	1e+0	At5g03470	ATB' ALPHA	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	77.0	Os04g0455600	AK103788.1	-	Conserved hypothetical protein	7e-7	At4g39860	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os02g0760200	AK063964.1	-	Conserved hypothetical protein	1e-5	At4g24610	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os06g0308300	AK102553.1	-	65kD microtubule associated protein	3e-29	At5g55230	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os12g0613700	AK121703.1	-	Transcriptional factor B3 family protein	9e-52	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os07g0568000	AK072783.1	-	Conserved hypothetical protein	2e-2	At1g10180	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os06g0284800	AK066358.1	-	Spectrin repeat containing protein	9e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.7	99.2	GSM159187	SAM, biological rep 2	GSE6893	Expression data for reproductive development in rice
17.0	98.8	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice
13.0	98.4	GSM159188	SAM, biological rep 3	GSE6893	Expression data for reproductive development in rice
11.3	98.2	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.4	97.9	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.0	97.8	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.6	97.5	GSM195228	Embryo	GSE7951	Genome-wide gene expression profiling of rice stigma
7.5	97.5	GSM67055	FL478 salt stressed replicate 1	GSE3053	Rice salt expression
7.3	97.5	GSM99877	TCHW P19_ir29 control, biological rep1	GSE4438	Expression data from rice under salinity stress
7.0	97.4	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	42	Os12g0158800	AK059233.1	-	Transcription factor E2F	3e-7	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	44	Os04g0583500	AF247165.1	-	Expansin 4 (Fragment)	2e+0	At3g29030	EXPA5 (EXPANSIN A5)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	44	Os10g0479200	NM_197022.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-2	42	Os02g0741800	AK073562.1	-	Permease 1	4e-25	At5g62890	permease, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os01g0909300	9629.m06763	-	Conserved hypothetical protein	2e-1	At3g06780	glycine-rich protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os01g0972900	AK109536.1	-	B-type cell cycle switch protein ccs52B	3e-19	At5g13840	FZR3 (FIZZY-RELATED 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-1	40	Os02g0781400	AK119213.1	-	20 kDa chaperonin, chloroplast precursor (ProteinCpn21) (Chloroplast protein Cpn10) (Chloroplastchaperonin 10) (Ch-CPN10) (Chaperonin 20)	2e+0	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-53	212	Arabidopsis thaliana	At2g19170	816434	SLP3	Encodes a novel subtilisin-like serine protease.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	8e-28	127	Glycine max	GmaAffx.31477.1.A1_at	CA784780	-	-	7e-57	At4g30020	subtilase family protein	C.G.	S.X.	Please select
0.45	0	950	Hordeum vulgare	Contig12129_at	Contig12129	-	-	2e-14	At4g30020	subtilase family protein	C.G.	S.X.	Please select
0.23	4e-51	204	Populus trichocarpa	PtpAffx.225099.1.S1_at	pmrna44197	hypothetical protein	-	3e-109	At4g30020	subtilase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	1076	Triticum aestivum	Ta.29457.1.S1_at	CK205969	-	-	1e-18	At4g30020	subtilase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1608213_at	CF209965	hypothetical protein LOC100245233	-	9e-2	At2g26290	ARSK1 (root-specific kinase 1)	C.G.	S.X.	Please select
0.36	0	702	Zea mays	Zm.10200.1.A1_at	BM379455	hypothetical protein LOC100274487	-	4e-6	At4g30020	subtilase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006508	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L	GO:0043086	Any process that stops or reduces the activity of an enzyme.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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