CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0699600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 87.9 Os06g0699600 AK121295.1 - CCT domain containing protein 6e-3 At3g47620 AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14) S.X. H.G.
0.55 73.7 Os01g0809900 AK120681.1 - FAD-dependent glycerol-3-phosphate dehydrogenasefamily protein 1e-2 At3g56840 FAD-dependent oxidoreductase family protein S.X. H.G.
0.55 73.7 Os09g0507400 AK067860.1 - Hypothetical protein 1e+0 At3g60890 ZPR2 (LITTLE ZIPPER 2) S.X. H.G.
0.46 60.9 Os09g0360700 9637.m01662 - - 1e+0 At5g13825 unknown protein S.X. H.G.
0.46 60.9 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative S.X. H.G.
0.44 58.1 Os06g0141000 9634.m00409 - Monosaccharide transporter 2e-1 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter S.X. H.G.
0.44 58.1 Os03g0565300 AK072093.1 - Conserved hypothetical protein 5e-1 At5g50790 nodulin MtN3 family protein S.X. H.G.
0.36 44.0 Os05g0409000 AK065999.1 - Ubiquitin-associated domain containing protein 9e-5 At2g26920 ubiquitin-associated (UBA)/TS-N domain-containing protein S.X. H.G.
0.33 38.8 Os04g0495000 9632.m03982 - Galactose-binding like domain containing protein 4e-2 At1g80240 unknown protein S.X. H.G.
0.32 36.3 Os10g0350400 NM_195939.1 - Ribosomal protein S12/S23 family protein 7e+0 At5g08060 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
68.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-26 121 Os02g0148000 AK120401.1 - Zinc finger protein 1e+0 At4g27810 unknown protein C.G. S.X.
0.01 2e-1 40 Os12g0577000 9640.m03777 - Targeting for Xklp2 family protein 5e-2 At5g38980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-3 44 Arabidopsis thaliana At3g47620 823916 AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14) Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner. - - - C.G. S.X.
0.02 5e-4 48 Glycine max Gma.17638.2.S1_at BI786260 - - 1e-6 At4g25990 CIL C.G. S.X.
0.13 8e-13 75 Hordeum vulgare Contig14271_at Contig14271 - - 5e-1 At1g80130 binding C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.126235.2.S1_at CV258769 - - 1e-2 At5g10360 EMB3010 (embryo defective 3010) C.G. S.X.
0.13 4e-13 77 Triticum aestivum Ta.25255.1.S1_s_at BJ296167 - - 2e+0 At1g80130 binding C.G. S.X.
0.01 4e-4 46 Vitis vinifera 1621672_at CB342264 hypothetical protein LOC100267324 - 2e-34 At5g05740 EGY2 C.G. S.X.
0.06 6e-4 46 Zea mays Zm.13091.1.A1_at CA404302 - - 2e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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