CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0699400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os06g0699400 AK071376.1 - MAP kinase 2 2e-23 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) S.X. H.G.
0.46 60.9 Os03g0239400 AK066563.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-2 At1g32150 bZIP transcription factor family protein S.X. H.G.
0.44 58.1 Os07g0586500 AK120683.1 - SUMO activating enzyme 2 6e-43 At2g21470 SAE2 (SUMO-ACTIVATING ENZYME 2) S.X. H.G.
0.41 52.4 Os03g0812200 AK067585.1 - Zn-finger, RING domain containing protein 3e-4 At1g47970 unknown protein S.X. H.G.
0.39 48.3 Os04g0609100 CA760607 - Conserved hypothetical protein 5e-1 At1g30890 integral membrane HRF1 family protein S.X. H.G.
0.39 48.3 Os08g0155700 AK062907.1 - DNA-directed RNA polymerase (EC 2.7.7.6) largestchain (Isoform B1)- like protein 1e-7 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) S.X. H.G.
0.36 44.0 Os03g0214900 AK100534.1 - Hypothetical protein 1e-1 At5g45860 Bet v I allergen family protein S.X. H.G.
0.36 44.0 Os09g0434000 AK062791.1 - FYVE/PHD zinc finger domain containing protein 9e-30 At3g43240 ARID/BRIGHT DNA-binding domain-containing protein S.X. H.G.
0.35 41.7 Os07g0497000 AK100332.1 - Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2) 2e-48 At5g44800 CHR4 (CHROMATIN REMODELING 4) S.X. H.G.
0.35 41.7 Os06g0558700 AK059039.1 - Poly(A) polymerase, RNA-binding region domaincontaining protein 6e-8 At2g25850 nucleotidyltransferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 97.5 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
6.9 97.3 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
5.8 97.0 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
5.3 96.7 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
4.8 96.5 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.8 96.5 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.6 96.3 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.3 96.1 GSM154955 Leaf_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
4.1 96.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 0 791 Os02g0148100 AF216317.1 - MAP kinase MAPK2 (MAP kinase 3) 7e-63 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.05 2e+0 36 Os08g0157000 9636.m00537 - Mitogen-activated protein kinase 4 9e-13 At1g01560 ATMPK11 C.G. S.X.
0.01 1e-1 40 Os01g0147900 M87064.1 - Triosephosphate isomerase, cytosolic (EC 5.3.1.1)(TIM) (Triose- phosphate isomerase) 1e-23 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.01 4e-1 38 Os03g0393900 AK069809.1 - Patatin-like protein 1 5e-2 At5g43590 patatin, putative C.G. S.X.
0.01 4e-1 38 Os06g0367900 AK066968.1 - Mitogen-activated protein kinase homologue 6e-61 At1g53510 ATMPK18 C.G. S.X.
0.01 4e-1 38 Os08g0500200 AK059046.1 - Conserved hypothetical protein 7e-14 At2g44200 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-23 111 Arabidopsis thaliana At1g10210 837559 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) Encodes ATMPK1. - - - C.G. S.X.
0.21 6e-18 93 Glycine max GmaAffx.85010.1.S1_at AW705742 - - 1e-29 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.57 0 916 Hordeum vulgare Contig5228_s_at Contig5228 - - 2e-17 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.22 9e-17 89 Populus trichocarpa Ptp.7444.1.S1_at BU834918 hypothetical protein - 7e-43 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.57 0 892 Triticum aestivum Ta.7205.1.S1_at BJ274532 - - 7e-17 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.09 4e-6 52 Vitis vinifera 1620793_at CB349229 hypothetical protein LOC100254083 - 3e-7 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.52 0 773 Zea mays Zm.6141.1.S1_at CA399949 MAPK - 4e-15 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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