CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0696500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative S.X. H.G.
0.76 92.2 Os01g0905400 AK063530.1 - Transcriptional factor B3 family protein 2e-2 At4g14580 CIPK4 (CBL-interacting protein kinase 4) S.X. H.G.
0.69 87.9 Os01g0971600 AK070366.1 - Sn-glycerol-3-phosphate dehydrogenase (Fragment) 4e-12 At5g40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH S.X. H.G.
0.67 87.2 Os06g0261300 AK073534.1 - Hypothetical protein 5e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) S.X. H.G.
0.67 87.2 Os12g0571500 AK119942.1 - Hypothetical protein 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) S.X. H.G.
0.55 73.7 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) S.X. H.G.
0.53 71.3 Os03g0730700 9631.m05092 - - 2e-1 At2g22980 serine-type carboxypeptidase S.X. H.G.
0.53 71.3 Os06g0246500 AK105105.1 - Pyruvate dehydrogenase E1 alpha subunit (EC1.2.4.1) 2e-29 At1g59900 AT-E1 ALPHA S.X. H.G.
0.50 68.0 Os08g0338500 AK107751.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 2e-2 At5g40860 unknown protein S.X. H.G.
0.50 68.0 Os12g0250800 CF318760 - Hypothetical protein 4e+0 At5g04390 zinc finger (C2H2 type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
96.0 100.0 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
94.8 100.0 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
36.0 99.8 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
20.1 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.0 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
7.2 97.4 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.2 97.4 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 2e-26 121 Os04g0604800 9632.m04978 - Xyloglucan endotransglycosylase (Fragment) 4e-4 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.24 1e-33 145 Os06g0696400 AK104912.1 - Xyloglycan endo-transglycosylase precursor 7e-10 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) C.G. S.X.
0.20 8e-29 129 Os08g0237800 9636.m01388 - Xyloglucan endotransglycosylase (Fragment) 5e-4 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.19 7e-20 99 Os06g0696600 AK105934.1 - Xyloglucan endo-transglycosylase homolog 9e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.17 4e-21 103 Os04g0604900 AK059203.1 - Xyloglucan endotransglycosylase (Fragment) 2e-10 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.16 3e-19 97 Os06g0697000 AK120345.1 - Xyloglucan endotransglucosylase/hydrolase proteinA precursor (EC 2.4.1.207) (VaXTH1) 3e-12 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-3 42 Arabidopsis thaliana At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO - - - C.G. S.X.
0.07 1e-5 52 Glycine max Gma.8077.2.S1_at AW781235 - - 4e-9 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.20 2e-32 139 Hordeum vulgare Contig2672_at Contig2672 xyloglucan xyloglucosyl transferase - 2e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.06 2e+0 34 Populus trichocarpa Ptp.6778.1.S1_s_at CN520892 hypothetical protein - 3e-23 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.22 6e-19 95 Triticum aestivum TaAffx.93308.1.S1_at BJ228671 - - 2e+0 At4g30270 MERI5B (meristem-5) C.G. S.X.
0.10 9e-6 50 Vitis vinifera 1619068_at CF215954 hypothetical protein LOC100250461 - 1e-13 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.20 4e-15 81 Zea mays Zm.6419.1.A1_at CF635415 xyloglucan endotransglucosylase/hydrolase - 3e-6 At5g13870 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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