CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0685100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 88.4 Os06g0685100 9634.m04589 - COBRA-like protein 10 precursor 2e-2 At3g42310 unknown protein S.X. H.G.
0.85 96.1 Os02g0214400 AK101009.1 - Pectate lyase homolog (EC 4.2.2.2) (Fragment) 4e+0 At4g13710 pectate lyase family protein S.X. H.G.
0.83 95.8 Os02g0187400 AK068914.1 - Glycerophosphoryl diester phosphodiesterase familyprotein 2e-2 At5g55480 SVL1 (SHV3-LIKE 1) S.X. H.G.
0.83 95.8 Os03g0738700 AK111764.1 - WD40-like domain containing protein 4e+0 At2g26490 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.80 94.6 Os05g0149100 AK107944.1 - C2 domain containing protein 9e-1 At4g09680 unknown protein S.X. H.G.
0.79 93.6 Os05g0595000 AK071326.1 - Allergen V5/Tpx-1 related family protein 1e+0 At3g60420 - S.X. H.G.
0.71 89.6 Os06g0144900 AK070509.1 - - 9e-1 At5g04310 pectate lyase family protein S.X. H.G.
0.70 88.4 Os09g0572800 AK120781.1 - Pollen Ole e 1 allergen and extensin domaincontaining protein 3e-1 At5g58412 - S.X. H.G.
0.70 88.4 Os11g0512800 AK064740.1 - Hypothetical protein 6e+0 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) S.X. H.G.
0.69 87.9 Os08g0398500 AK072742.1 - KED-like protein 4e-1 At2g39320 OTU-like cysteine protease family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
298.5 100.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.6 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-7 57 Os07g0690900 AK100144.1 - Phytochelatin synthetase-like conserved regionfamily protein 1e+0 At2g28370 - C.G. S.X.
0.02 3e-6 56 Os01g0289600 9629.m01807 - DNA-binding WRKY domain containing protein 3e-4 At4g01720 WRKY47 C.G. S.X.
0.02 2e-4 50 Os04g0376500 AK103713.1 - Eukaryotic translation initiation factor 3 subunit3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) 6e-26 At1g10840 TIF3H1 C.G. S.X.
0.02 2e-4 50 Os10g0155400 9638.m00587 - Amidase family protein 3e+0 At4g03540 integral membrane family protein C.G. S.X.
0.01 1e-5 54 Os04g0629000 AK120653.1 - Conserved hypothetical protein 3e-1 At3g21865 PEX22 (peroxin 22) C.G. S.X.
0.01 4e-5 52 Os06g0215000 AK070686.1 - Conserved hypothetical protein 9e-1 At3g42310 unknown protein C.G. S.X.
0.01 4e-5 52 Os08g0510900 AK069250.1 - Conserved hypothetical protein 2e-1 At1g17300 unknown protein C.G. S.X.
0.01 2e-4 50 Os01g0140100 AK068990.1 - Peptidase A1, pepsin family protein 6e-5 At3g18490 aspartyl protease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 42 Arabidopsis thaliana At3g42310 823222 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPO - - - C.G. S.X.
0.02 1e-1 40 Glycine max HgAffx.9579.1.S1_at CB378922 - - 5e-2 At5g53590 auxin-responsive family protein C.G. S.X.
0.07 2e-3 44 Hordeum vulgare Contig6773_at Contig6773 - - 5e-3 At3g20580 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) C.G. S.X.
0.02 1e-1 40 Populus trichocarpa PtpAffx.219021.1.S1_at pmrna34811 hypothetical protein - 2e+0 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) C.G. S.X.
0.03 2e-2 42 Triticum aestivum TaAffx.37933.1.S1_at BJ258211 - - 4e+0 At1g62850 - C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1618512_at BQ795722 hypothetical protein LOC100252904 - 5e-7 At5g06330 hairpin-responsive protein, putative (HIN1) C.G. S.X.
0.03 3e-2 40 Zea mays Zm.9667.1.A1_at BM341541 transcription factor MYB42 - 1e+0 At3g48490 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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