CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0673300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 96.0 Os06g0673300 AK070761.1 - Hypothetical protein 2e+0 At3g26990 - S.X. H.G.
0.71 89.6 Os05g0317300 AK064846.1 - FAR1 domain containing protein 4e-1 At5g25750 unknown protein S.X. H.G.
0.61 81.2 Os05g0596600 AK107823.1 - SMC protein, N-terminal domain containing protein 6e-28 At5g15920 structural maintenance of chromosomes (SMC) family protein (MSS2) S.X. H.G.
0.61 81.2 Os11g0661000 AK066047.1 - TPR-like domain containing protein 9e-3 At4g14050 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.59 78.0 Os11g0136800 AK063731.1 - Dual specificity protein phosphatase 19 (EC3.1.3.48) (EC 3.1.3.16) (Protein phosphatase SKRP1).Splice isoform 2 3e+0 At5g15560 unknown protein S.X. H.G.
0.54 71.9 Os03g0308500 CB639253 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 5e-7 At2g47330 DEAD/DEAH box helicase, putative S.X. H.G.
0.53 71.3 Os03g0193300 AK069156.1 - - 8e-2 At5g06530 ABC transporter family protein S.X. H.G.
0.53 71.3 Os05g0150600 AY180331.1 - ATP-dependent DNA helicase RecQ family protein 6e-6 At5g27680 RECQSIM (Arabidopsis RecQ helicase sim) S.X. H.G.
0.52 69.6 Os01g0689600 CB679841 - Conserved hypothetical protein 6e+0 At2g39782 unknown protein S.X. H.G.
0.51 68.7 Os03g0581100 AK065977.1 - Conserved hypothetical protein 3e-2 At5g09805 IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.4 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.2 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 0 848 Os06g0673500 CR289356 - Ubiquitin domain containing protein 4e-32 At4g02890 UBQ14 C.G. S.X.
0.34 4e-169 597 Os06g0672700 AK101470.1 - Hypothetical protein 5e+0 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative C.G. S.X.
0.27 4e-103 377 Os02g0161900 AK101547.1 - Ubiquitin 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.25 1e-118 428 Os06g0681400 U37687.1 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.18 5e-118 426 Os01g0930400 BI812278 - K+ potassium transporter family protein 4e-7 At4g13420 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) C.G. S.X.
0.11 2e-97 359 Os03g0192600 AK105970.1 - Plant lipid transfer protein/Par allergen familyprotein 6e-1 At2g22122 unknown protein C.G. S.X.
0.09 5e-79 297 Os08g0558800 AK071249.1 - 60S ribosomal protein L10a-3 4e-63 At5g22440 60S ribosomal protein L10A (RPL10aC) C.G. S.X.
0.06 1e-61 240 Os05g0521300 AK065361.1 - Kinesin 4 (Kinesin-like protein D) 7e-25 At1g63640 kinesin motor protein-related C.G. S.X.
0.05 6e-54 214 Os04g0394300 AK111819.1 - The start codon is not identified. 1e-10 At3g27700 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At3g26990 822316 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPOBV - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.CL1724Contig1_at PsAffx.CL1724Contig1 - - 1e+0 At3g17160 unknown protein C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig20427_at Contig20427 - - 1e+0 At2g48100 exonuclease family protein C.G. S.X.
0.01 4e-2 42 Populus trichocarpa PtpAffx.36811.1.A1_at CV277992 - - 8e-4 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.01 2e-6 56 Triticum aestivum Ta.15690.1.S1_at CA486325 - - 3e+0 At1g54240 DNA binding C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1615142_at CF405765 hypothetical protein LOC100266152 - 6e-2 At1g24010 - C.G. S.X.
0.01 3e+0 34 Zea mays Zm.18010.1.A1_at CA400888 - - 2e+0 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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