CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0663200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.28 31.1 Os06g0663200 AK100479.1 - Protein kinase APK1A (EC 2.7.1.-) 3e-10 At3g28690 protein kinase, putative S.X. H.G.
0.73 91.1 Os01g0261200 AB028187.1 - No apical meristem (NAM) protein domain containingprotein 7e-5 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) S.X. H.G.
0.59 78.0 Os04g0584600 AB042550.1 - Calcium dependent protein kinase 3e-44 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
0.50 68.0 Os01g0672400 AK064817.1 - Drought induced 19 family protein 3e-1 At4g32090 galactosyltransferase S.X. H.G.
0.47 62.3 Os05g0473500 AK101630.1 - Exo70 exocyst complex subunit family protein 5e+0 At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.47 62.3 Os01g0748900 AK071946.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 3e-4 At1g29690 CAD1 (constitutively activated cell death 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 98.3 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
8.6 97.8 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.6 97.8 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.5 97.7 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
8.3 97.7 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
7.9 97.6 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.7 96.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.7 96.9 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.4 96.8 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.3 96.7 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-12 75 Os09g0361100 AK064216.1 - Protein kinase APK1A (EC 2.7.1.-) 1e-70 At5g15080 protein kinase, putative C.G. S.X.
0.07 6e-13 77 Os11g0121400 AK102267.1 - Avr9/Cf-9 rapidly elicited protein 264 9e-35 At5g01020 protein kinase family protein C.G. S.X.
0.04 6e-13 77 Os01g0588500 AK103037.1 - Protein kinase APK1A (EC 2.7.1.-) 3e-60 At3g01300 protein kinase, putative C.G. S.X.
0.03 6e-4 48 Os09g0442100 AK111977.1 - Avr9/Cf-9 rapidly elicited protein 264 1e-9 At5g56460 protein kinase, putative C.G. S.X.
0.02 6e-4 48 Os01g0973500 AK069546.1 - Protein kinase APK1A (EC 2.7.1.-) 7e-48 At1g07570 APK1A C.G. S.X.
0.02 2e-3 46 Os06g0727400 AK069558.1 - Probable serine/threonine-protein kinase NAK (EC2.7.1.37) 9e-7 At2g17220 protein kinase, putative C.G. S.X.
0.01 2e-3 46 Os01g0709500 AK121129.1 - Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1) 9e-12 At2g20300 ALE2 (Abnormal Leaf Shape 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-10 67 Arabidopsis thaliana At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.11 5e-19 97 Glycine max Gma.13247.1.S1_at CD391759 - - 1e-22 At2g07180 protein kinase, putative C.G. S.X.
0.08 1e-11 71 Hordeum vulgare Contig17814_at Contig17814 - - 1e-25 At3g01300 protein kinase, putative C.G. S.X.
0.20 5e-16 87 Populus trichocarpa PtpAffx.145915.1.S1_at BU815760 hypothetical protein - 2e-50 At2g07180 protein kinase, putative C.G. S.X.
0.12 4e-34 147 Triticum aestivum TaAffx.105938.1.S1_at CA727568 - - 5e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1607675_at CD011506 hypothetical protein LOC100253466 - 3e-11 At1g07570 APK1A C.G. S.X.
0.22 2e-46 186 Zea mays Zm.12018.1.A1_at BM382690 - - 2e+0 At1g72540 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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