CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0657500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.6 Os06g0657500 AK101959.1 - ANT (Ovule development protein aintegumenta) 3e-10 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) S.X. H.G.
0.83 95.8 Os11g0295900 9639.m01770 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-5 At5g65510 AIL7 (AINTEGUMENTA-like 7) S.X. H.G.
0.80 94.6 Os05g0143600 AK107844.1 - Jacalin-related lectin domain containing protein 2e+0 At5g26740 unknown protein S.X. H.G.
0.80 94.6 Os01g0939300 AK101079.1 - BRCT domain containing protein 2e-8 At3g21480 - S.X. H.G.
0.73 91.1 Os01g0667400 AK064236.1 - Conserved hypothetical protein 2e-1 At3g18880 ribosomal protein S17 family protein S.X. H.G.
0.71 89.6 Os01g0369200 AK073477.1 - Cullin family protein 3e-4 At1g02980 CUL2 (CULLIN 2) S.X. H.G.
0.60 79.7 Os06g0520600 AK101510.1 - Eukaryotic initiation factor-like protein 1e+0 At5g03837 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
77.2 99.9 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
26.1 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 0 801 Os06g0658000 9634.m04338 - - 3e-1 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.16 5e-47 190 Os07g0124700 AK109848.1 - ANT (Ovule development protein aintegumenta) 3e-6 At1g72570 DNA binding / transcription factor C.G. S.X.
0.15 6e-65 250 Os01g0899800 9629.m06698 - ANT (Ovule development protein aintegumenta) 6e-30 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
0.10 5e-44 180 Os02g0614300 AK112070.1 - ANT (Ovule development protein aintegumenta) 5e-20 At1g51190 PLT2 (PLETHORA 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-10 67 Arabidopsis thaliana At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. - - - C.G. S.X.
0.29 4e-47 190 Glycine max GmaAffx.91601.1.S1_s_at CF807326 - - 1e-47 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
0.04 1e-10 67 Hordeum vulgare Contig15309_at Contig15309 - - 1e-2 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.26 2e-21 105 Populus trichocarpa PtpAffx.214377.1.S1_s_at pmrna27977 AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor - 1e-24 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.02 1e-2 42 Triticum aestivum TaAffx.23554.1.S1_at CA733415 - - 4e+0 At3g11470 4'-phosphopantetheinyl transferase family protein C.G. S.X.
0.04 3e-4 46 Vitis vinifera 1610205_at CF510900 hypothetical protein LOC100252316 - 4e-34 At4g37750 ANT (AINTEGUMENTA) C.G. S.X.
0.45 0 680 Zea mays Zm.123.1.S1_at AY109146.1 heat shock complementing factor1 - 2e-5 At5g57390 AIL5 (AINTEGUMENTA-LIKE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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