CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0638500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os06g0638500 9634.m04167 - Protein kinase domain containing protein 3e-4 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) S.X. H.G.
0.47 62.3 Os01g0140400 AK103044.1 - Leucine-rich repeat, plant specific containingprotein 1e-1 At1g25570 leucine-rich repeat protein-related S.X. H.G.
0.46 60.9 Os12g0596600 AK064196.1 - Hypothetical protein 3e-4 At3g50780 - S.X. H.G.
0.38 46.9 Os02g0190500 AK111710.1 - Leucine-rich repeat transmembrane protein kinase 2 2e-18 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) S.X. H.G.
0.27 27.5 Os04g0685900 AK063635.1 - Receptor-like protein kinase-like protein(Fragment) 3e-2 At2g01820 leucine-rich repeat protein kinase, putative S.X. H.G.
0.20 16.5 Os12g0565300 AK073968.1 - Calmodulin-binding protein MPCBP 2e-14 At2g43040 NPG1 (no pollen germination 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.0 98.7 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
10.7 98.1 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
6.7 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 0 1231 Os06g0638400 AK109644.1 - Hypothetical protein 7e-1 At4g37250 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.19 1e-97 359 Os02g0695000 9630.m04547 - - 1e+1 At5g47570 unknown protein C.G. S.X.
0.03 2e-10 69 Os07g0152200 9635.m00512 - Receptor-like protein kinase 3e-5 At1g17230 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.03 7e-7 57 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 1e-5 54 Os07g0626500 AK059532.1 - Protein kinase domain containing protein 2e-3 At5g10020 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-4 48 Arabidopsis thaliana At1g25540 839141 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. - - - C.G. S.X.
0.01 2e-3 46 Glycine max HgAffx.2243.1.A1_at CK351480 - - 6e-5 At5g23950 C2 domain-containing protein C.G. S.X.
0.04 2e-4 48 Hordeum vulgare Contig17728_at Contig17728 - - 2e+0 At3g21510 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) C.G. S.X.
0.01 3e-2 42 Populus trichocarpa PtpAffx.208494.1.S1_s_at pmrna16869 hypothetical protein - 4e-2 At5g61510 NADP-dependent oxidoreductase, putative C.G. S.X.
0.16 4e-47 190 Triticum aestivum TaAffx.70432.1.A1_at CD492184 - - 7e-2 At5g63350 unknown protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1618958_at AY427138.1 - - 3e-1 At4g00680 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) C.G. S.X.
0.03 1e-1 38 Zea mays ZmAffx.372.1.A1_at AI673888 anther-specific protein SF18 - 8e-1 At3g59680 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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