CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0634500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os06g0634500 AK111551.1 - Protein kinase domain containing protein 1e-13 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) S.X. H.G.
0.67 87.2 Os04g0505200 AK066703.1 - Leucine-rich repeat, plant specific containingprotein 1e-7 At1g01910 anion-transporting ATPase, putative S.X. H.G.
0.50 68.0 Os05g0363500 CA757967 - ARM repeat fold domain containing protein 2e+0 At3g23245 unknown protein S.X. H.G.
0.38 46.9 Os05g0140100 AK111821.1 - Myb, DNA-binding domain containing protein 1e-10 At1g57560 AtMYB50 (myb domain protein 50) S.X. H.G.
0.38 46.9 Os01g0750000 AY327044.1 - Ras-related protein RIC2 1e-20 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) S.X. H.G.
0.30 32.7 Os02g0655800 AK101947.1 - Protein kinase domain containing protein 4e-3 At5g61570 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.1 99.7 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
29.6 99.7 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
24.2 99.4 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
17.7 98.9 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.6 97.5 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
7.5 97.5 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
7.0 97.4 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
6.8 97.3 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
6.3 97.2 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
6.2 97.1 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 2e-106 389 Os02g0190500 AK111710.1 - Leucine-rich repeat transmembrane protein kinase 2 2e-18 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.06 1e-14 83 Os03g0397700 AK111635.1 - Serine/threonine protein kinase-like protein(Strubbelig receptor family 7) 1e-3 At1g53730 SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) C.G. S.X.
0.04 2e-4 50 Os07g0618400 AK111671.1 - Protein kinase domain containing protein 4e-4 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.04 2e-4 50 Os07g0618500 AK068975.1 - Folate synthesis protein precursor [INCLUDES:2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase (EC 2.7.6.3) (HPPK) 7e-6 At1g53450 unknown protein C.G. S.X.
0.03 2e-10 69 Os10g0389800 NM_196278.1 - Protein kinase domain containing protein 2e-8 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
0.01 7e-4 48 Os03g0183800 AK100621.1 - - 9e-8 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
0.01 7e-4 48 Os06g0578800 9634.m03625 - - 4e-2 At1g33040 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-13 79 Arabidopsis thaliana At4g22130 828302 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) F:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.06 4e-11 71 Glycine max GmaAffx.36693.1.S1_at BG881453 - - 2e-70 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.41 0 848 Hordeum vulgare Contig6842_at Contig6842 - - 2e-4 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) C.G. S.X.
0.26 5e-44 180 Populus trichocarpa PtpAffx.209626.1.S1_at pmrna19021 hypothetical protein - 3e-113 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.31 3e-125 450 Triticum aestivum Ta.27027.1.S1_s_at CA596068 - - 9e-34 At4g22130 SRF8 (STRUBBELIG-RECEPTOR FAMILY 8) C.G. S.X.
0.09 2e-12 73 Vitis vinifera 1619614_at CF372273 hypothetical protein LOC100249831 - 2e-36 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
0.04 2e-7 57 Zea mays Zm.382.1.S1_at CF020226 leucine-rich transmembrane protein kinase1 - 4e-16 At3g14350 SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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