CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0618600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.4 Os06g0618600 AK060212.1 - Conserved hypothetical protein 8e-8 At1g50120 - S.X. H.G.
0.90 97.1 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative S.X. H.G.
0.71 89.6 Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic S.X. H.G.
0.70 88.4 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein S.X. H.G.
0.67 87.2 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) S.X. H.G.
0.63 82.7 Os02g0537900 AK070310.1 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative S.X. H.G.
0.60 79.7 Os11g0181100 AK100605.1 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.58 77.0 Os03g0355600 AK068938.1 - Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B 0 At4g23460 beta-adaptin, putative S.X. H.G.
0.58 77.0 Os02g0690700 AU030655 - Clathrin adaptor complex, medium chain familyprotein 3e+0 At1g19770 ATPUP14 S.X. H.G.
0.57 77.0 Os01g0911200 AK101333.1 - Ribophorin II family protein 1e-6 At4g21150 HAP6 (HAPLESS 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.4 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM99866 TCHW P9_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
3.5 95.3 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.2 94.9 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.2 94.9 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
3.1 94.8 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Os02g0469300 AK063552.1 - ATP-binding region, ATPase-like domain containingprotein 2e-8 At4g24970 ATP-binding region, ATPase-like domain-containing protein C.G. S.X.
0.01 6e-1 38 Os04g0479100 AK071348.1 - Conserved hypothetical protein 1e+0 At3g55646 unknown protein C.G. S.X.
0.01 2e+0 36 Os01g0267400 AU082078 - Uncharacterized Cys-rich domain containing protein 6e-3 At2g40935 unknown protein C.G. S.X.
0.01 2e+0 36 Os03g0787200 AK103438.1 - IQ calmodulin-binding region domain containingprotein 2e-11 At3g22190 IQD5 (IQ-domain 5) C.G. S.X.
0.01 2e+0 36 Os07g0607800 AK069010.1 - Conserved hypothetical protein 6e-2 At4g26110 NAP1 C.G. S.X.
0.01 2e+0 36 Os07g0620100 NM_189853.1 - - 1e-1 At1g10140 - C.G. S.X.
0.01 2e+0 36 Os10g0464800 9638.m02851 - - 2e-1 At1g07135 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-8 59 Arabidopsis thaliana At1g50120 841434 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO - - - C.G. S.X.
0.02 4e-1 38 Glycine max Gma.8563.1.S1_s_at BU761175 - - 3e+0 At3g26710 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) C.G. S.X.
0.37 0 684 Hordeum vulgare Contig10566_at Contig10566 - - 2e-1 At1g50120 - C.G. S.X.
0.05 3e-2 42 Populus trichocarpa Ptp.704.1.S1_at CF228462 hypothetical protein - 3e-9 At1g50120 - C.G. S.X.
0.23 4e-87 323 Triticum aestivum Ta.12265.2.S1_at CA629938 - - 4e-1 At5g23535 KOW domain-containing protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1607273_at CA817598 hypothetical protein LOC100261673 - 4e-3 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) C.G. S.X.
0.38 4e-97 355 Zea mays Zm.5625.1.S1_at BQ487235 - - 2e-11 At5g53740 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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