CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0607000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os06g0607000 AK121115.1 - Beta-1,3-glucanase-like protein 1e-3 At2g26600 glycosyl hydrolase family 17 protein S.X. H.G.
0.38 46.9 Os08g0129700 AB099292.1 - NAD-dependent epimerase/dehydratase family protein 7e-14 At1g30620 MUR4 (MURUS 4) S.X. H.G.
0.35 41.7 Os02g0590800 AK060204.1 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) S.X. H.G.
0.27 27.5 Os02g0518100 AK103390.1 - Protein of unknown function DUF803 family protein 5e-21 At3g26670 - S.X. H.G.
0.07 3.7 Os02g0729700 AF264731.1 - Leucine zipper, homeobox-associated domaincontaining protein 4e-2 At5g66700 HB53 S.X. H.G.
0.05 2.5 Os07g0501900 AK120945.1 - Zn-finger, RING domain containing protein 4e-19 At4g28370 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 96.5 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5 96.3 GSM421703 XOO, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4 96.2 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
4.3 96.1 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
4.0 95.9 GSM154956 Leaf_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
3.8 95.7 GSM421725 MOCK, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.8 95.7 GSM421681 XOC, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.7 95.6 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.7 95.6 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-3 44 Os02g0200300 AK100683.1 - Glycoside hydrolase, family 17 protein 3e-4 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.01 8e-3 44 Os02g0149800 CB682796 - Protein phosphatase 2C family protein 3e-28 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) C.G. S.X.
0.01 8e-3 44 Os07g0466200 AK106501.1 - Conserved hypothetical protein 2e-17 At5g61450 2-phosphoglycerate kinase-related C.G. S.X.
0.01 3e-2 42 Os01g0182200 AK109424.2 - Small basic membrane integral protein ZmSIP1-2 4e-11 At3g04090 SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A) C.G. S.X.
0.01 3e-2 42 Os01g0213800 AB071805.1 - Transcription factor PCF5 5e-3 At2g31070 TCP10 (TCP DOMAIN PROTEIN 10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-3 46 Arabidopsis thaliana At2g26600 817201 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POF - - - C.G. S.X.
0.04 2e-8 61 Glycine max GmaAffx.28750.1.S1_at BI967217 - - 1e-8 At2g26600 glycosyl hydrolase family 17 protein C.G. S.X.
0.32 1e-75 284 Hordeum vulgare Contig16187_at Contig16187 - - 6e-3 At2g27500 glycosyl hydrolase family 17 protein C.G. S.X.
0.10 3e-17 91 Populus trichocarpa PtpAffx.37866.1.A1_s_at CV235780 hypothetical protein - 1e-1 At4g34480 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.48 1e-163 577 Triticum aestivum Ta.4389.1.S1_s_at CA706206 beta-1,3-glucanase - 6e-1 At2g27500 glycosyl hydrolase family 17 protein C.G. S.X.
0.03 3e-7 56 Vitis vinifera 1611001_at CF204537.1 - - 7e-12 At2g26600 glycosyl hydrolase family 17 protein C.G. S.X.
0.47 4e-146 517 Zea mays Zm.3796.1.A1_at BG836961 Hypothetical protein LOC100192039 - 8e-1 At2g32765 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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