CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0598500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os06g0598500 AK058623.1 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 0 Atcg00490 - S.X. H.G.
0.91 98.9 Os01g0792400 AK062797.1 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - S.X. H.G.
0.83 95.8 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - S.X. H.G.
0.83 95.8 Os04g0235600 CR291556 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - S.X. H.G.
0.77 93.1 Os10g0527100 BI795990 - Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV) 2e+0 At5g15850 COL1 (constans-like 1) S.X. H.G.
0.67 87.2 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 97.8 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 0 1314 Os03g0410700 AU173963 - Conserved hypothetical protein 2e-2 At1g72640 binding / catalytic C.G. S.X.
0.30 0 835 Os01g0791600 9633.m03286 - Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit) 4e-129 Atcg00490 - C.G. S.X.
0.01 4e-2 42 Os05g0458100 AK101652.1 - Peptidylprolyl cis-trans isomerase (EC 5.2.1.8) 3e-30 At3g55520 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative C.G. S.X.
0.01 2e+0 36 Os02g0598400 AK068111.1 - Lipovitellin, superhelical domain containingprotein 1e-1 At3g48470 EMB2423 (EMBRYO DEFECTIVE 2423) C.G. S.X.
0.01 2e+0 36 Os02g0598500 9630.m03706 - Protein phosphatase 2C family protein 1e-1 At3g48470 EMB2423 (EMBRYO DEFECTIVE 2423) C.G. S.X.
0.01 2e+0 36 Os05g0562400 AK121237.1 - DDT domain containing protein 2e-7 At1g28420 HB-1 (homeobox-1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 1348 Arabidopsis thaliana Atcg00490 - - large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. - - - C.G. S.X.
0.03 2e+0 36 Glycine max GmaAffx.76417.1.S1_at BE609069 - - 4e+0 At5g56430 F-box family protein C.G. S.X.
0.17 3e-89 329 Hordeum vulgare HZ40F21r_at HZ40F21r - - 5e-32 Atcg00490 - C.G. S.X.
0.28 4e-66 254 Populus trichocarpa PtpAffx.211235.1.S1_s_at pmrna22063 - - 1e-92 Atcg00490 - C.G. S.X.
0.66 0 2371 Triticum aestivum TaAffx.128414.1.A1_x_at AY328025.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit - 0 Atcg00490 - C.G. S.X.
0.44 0 854 Vitis vinifera 1607106_s_at CD720969 similar to Os06g0598500 - 0 Atcg00490 - C.G. S.X.
0.69 0 2315 Zea mays ZmAffx.1463.1.S1_at 11990232-30 - - 0 Atcg00490 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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