Gene omics information

Query gene ID	Os06g0591200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os06g0591200	AK062563.1	-	Conserved hypothetical protein	1e-1	At1g60950	FED A	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os06g0493100	AY256682.1	-	Hypothetical protein	1e+0	At5g38950	germin-like protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os01g0940800	AK068247.1	-	Beta-1,3-glucanase precursor	1e-5	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	Os10g0569400	AK062449.1	-	RIR1a protein precursor	3e-1	At2g29180	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os10g0569600	BQ529575	-	RIR1b protein precursor	1e+0	At2g25344	LCR14 (Low-molecular-weight cysteine-rich 14)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os12g0555200	AK070762.1	-	Probenazole-inducible protein PBZ1	2e+0	At2g34530	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.5	99.8	GSM262017	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
32.6	99.8	GSM262020	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
30.3	99.7	GSM262021	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
30.0	99.7	GSM262004	IAC165, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
27.8	99.6	GSM262016	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.9	98.9	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.3	98.6	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.1	98.5	GSM262008	IAC165, 11 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.1	98.4	GSM262012	Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.2	98.3	GSM262001	IAC165, 2 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	44	Os10g0557800	AK073483.1	-	-	1e+0	At4g32260	ATP synthase family	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-2	42	Os04g0453400	AK070018.1	-	Sugar transporter family protein	1e-2	At4g21480	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-2	42	Os10g0359500	AK072682.1	-	No apical meristem (NAM) protein domain containingprotein	9e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	42	Os05g0459700	9633.m03572	-	Beta-Ig-H3/fasciclin domain containing protein	3e-13	At1g14970	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	42	Os08g0143400	AK120532.1	-	Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase1) (PAO-1) (PAOh1). Splice isoform 10	1e-3	At3g10390	FLD (FLOWERING LOCUS D)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	42	Os10g0496000	AK109091.1	-	The start codon is not identified.	2e-7	At2g28810	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At1g60950	842386	FED A	encodes a major leaf ferredoxin	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.73080.1.S1_at	BI427357	-	-	2e-1	At4g21620	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e-3	42	Hordeum vulgare	Contig9743_at	Contig9743	-	-	4e-4	At3g09922	IPS1 (INDUCED BY PHOSPHATE STARVATION1)	C.G.	S.X.	Please select
0.03	1e-1	38	Populus trichocarpa	PtpAffx.218478.1.S1_at	pmrna34106	hypothetical protein	-	3e+0	At4g39550	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-3	42	Triticum aestivum	TaAffx.52376.1.S1_at	CA708428	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1616772_at	CD799675	hypothetical protein LOC100244510	-	1e-6	At1g20670	DNA-binding bromodomain-containing protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zea mays	Zm.11953.1.S1_at	CO531764	metal tolerance protein A2	-	4e-6	At2g46800	ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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