CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os06g0586700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os06g0586700 9634.m03692 - - 6e-1 At5g01510 - S.X. H.G.
0.20 16.5 Os11g0474800 AK108710.1 - Terpene synthase-like domain containing protein 2e-1 At5g23950 C2 domain-containing protein S.X. H.G.
0.19 15.1 Os08g0353700 AK058799.1 - Conserved hypothetical protein 8e-2 At1g69470 unknown protein S.X. H.G.
0.08 4.2 Os10g0510100 NM_197298.1 - - 1e-1 At1g76220 unknown protein S.X. H.G.
0.04 2.0 Os01g0784500 AK109693.1 - Receptor-like protein kinase 4 4e-6 At1g11410 S-locus protein kinase, putative S.X. H.G.
0.03 1.4 Os03g0221200 AK068002.1 - Homocysteine S-methyltransferase 1 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 1)(SMM:Hcy S- methyltransferase 1) (ZmHMT-1) 2e-7 At3g25900 HMT-1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.4 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.0 99.9 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
39.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.0 99.5 GSM302920 root_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
15.6 98.7 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.7 98.4 GSM154939 Root_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.6 98.4 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-15 83 Os06g0587100 9634.m03696 - Conserved hypothetical protein 3e+0 At3g02000 ROXY1 C.G. S.X.
0.04 2e-2 40 Os01g0306100 AK111041.1 - Conserved hypothetical protein 7e-3 At3g42310 unknown protein C.G. S.X.
0.03 3e-4 46 Os03g0745000 AY332465.1 - Heat shock factor (HSF)-type, DNA-binding domaincontaining protein 2e-13 At3g22830 AT-HSFA6B C.G. S.X.
0.03 1e-3 44 Os01g0909300 9629.m06763 - Conserved hypothetical protein 2e-1 At3g06780 glycine-rich protein C.G. S.X.
0.02 2e-2 40 Os04g0669800 AK067649.1 - 5-methylthioribose kinase family protein 2e-4 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) C.G. S.X.
0.01 2e-2 40 Os06g0574200 9634.m03588 - UspA domain containing protein 8e-2 At1g16760 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 34 Arabidopsis thaliana At5g01510 831819 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB - - - C.G. S.X.
0.05 6e-2 38 Glycine max GmaAffx.87275.1.S1_at BM308655 - - 2e-1 At4g35810 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 8e-2 36 Hordeum vulgare HV_CEa0012H15r2_at HV_CEa0012H15r2 - - 4e+0 At1g11450 nodulin MtN21 family protein C.G. S.X.
0.04 9e-1 34 Populus trichocarpa PtpAffx.69294.2.S1_s_at AJ768330 hypothetical protein - 8e-5 At1g55140 RNA binding / ribonuclease III C.G. S.X.
0.06 3e-3 42 Triticum aestivum Ta.28203.1.S1_at BG262830 - - 1e+0 At1g04640 LIP2 (LIPOYLTRANSFERASE 2) C.G. S.X.
0.06 3e+0 30 Vitis vinifera 1615168_at CF602900 hypothetical protein LOC100250140 - 4e+0 At4g31580 SRZ-22 C.G. S.X.
0.03 3e-1 34 Zea mays Zm.2171.1.A1_at BG841205 - - 1e+0 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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