Gene omics information

Query gene ID	Os06g0573600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	55.4	Os06g0573600	AK105619.1	-	Beta-galactosidase precursor (EC 3.2.1.23)(Lactase)	7e-6	At4g26140	BGAL12 (beta-galactosidase 12)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os08g0417000	AK068735.1	-	2OG-Fe(II) oxygenase domain containing protein	7e-4	At5g62240	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os05g0344400	CB672461	-	Protein of unknown function DUF588 family protein	2e+0	At5g39230	transcription initiation factor-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	Os08g0102700	AK099239.1	-	Harpin-induced 1 domain containing protein	1e-2	At3g42310	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os03g0751600	AK105937.1	-	Heavy metal transport/detoxification proteindomain containing protein	9e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	Os02g0159200	AK102507.1	-	Eukaryotic protein of unknown function DUF292domain containing protein	8e-2	At4g32350	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	97.8	GSM159210	Seed (S2, 3 - 4 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
7.9	97.6	GSM159208	Seed (S1, 0 - 2 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
7.8	97.6	GSM159207	Seed (S1, 0 - 2 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
7.6	97.5	GSM159212	Seed (S2, 3 - 4 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.4	97.5	GSM159211	Seed (S2, 3 - 4 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
7.4	97.5	GSM429985	Rice mutant phoenix (pho) panicle rep 2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
7.0	97.4	GSM159213	Seed (S3, 5 - 10 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
6.7	97.3	GSM302922	seedling_rep1	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
6.3	97.2	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
6.2	97.1	GSM195230	5d-seed	GSE7951	Genome-wide gene expression profiling of rice stigma

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	3e-77	291	Os02g0219300	AK059794.1	-	Conserved hypothetical protein	4e-2	At4g36360	BGAL3 (beta-galactosidase 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	1e-76	289	Os01g0580200	AK103045.1	-	Beta-galactosidase precursor (EC 3.2.1.23)(Lactase) (Acid beta- galactosidase)(Exo-(1-->4)-beta-D-galactanase)	1e-10	At3g52840	BGAL2 (beta-galactosidase 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	4e-27	125	Os03g0255100	AK061989.1	-	Beta-galactosidase (EC 3.2.1.23)	3e-8	At2g28470	BGAL8 (beta-galactosidase 8)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	2e-17	93	Os08g0549200	AK069066.1	-	Glycoside hydrolase, family 35 protein	2e-5	At4g26140	BGAL12 (beta-galactosidase 12)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	2e-16	89	Os01g0875500	BE040411	-	Beta-galactosidase (EC 3.2.1.23)	8e-2	At5g63810	BGAL10 (beta-galactosidase 10)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-6	54	Arabidopsis thaliana	At4g26140	828720	BGAL12 (beta-galactosidase 12)	putative beta-galactosidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-9	65	Glycine max	Gma.3508.1.S1_s_at	BI968765	-	-	5e-71	At5g56870	BGAL4 (beta-galactosidase 4)	C.G.	S.X.	Please select
0.54	0	1279	Hordeum vulgare	Contig11583_at	Contig11583	-	-	4e-3	At5g63800	MUM2 (MUCILAGE-MODIFIED 2)	C.G.	S.X.	Please select
0.07	6e-13	77	Populus trichocarpa	PtpAffx.77490.1.S1_at	CK107056	hypothetical protein	-	4e-19	At1g45130	BGAL5 (beta-galactosidase 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	0	1209	Triticum aestivum	Ta.24199.1.S1_at	BJ251108	-	-	6e-8	At3g13750	BGAL1 (Beta galactosidase 1)	C.G.	S.X.	Please select
0.02	3e-5	50	Vitis vinifera	1622421_at	CF568853	-	-	1e-52	At5g56870	BGAL4 (beta-galactosidase 4)	C.G.	S.X.	Please select
0.34	0	646	Zea mays	Zm.4252.1.A1_at	AW000686	hypothetical protein LOC100191631	-	7e-1	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0005975	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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